Variant report

Variant	rs4945501
Chromosome Location	chr6:114003329-114003330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10872102	0.84[ASN][1000 genomes]
rs12176307	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1277834	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4142803	0.81[AMR][1000 genomes]
rs4945964	0.83[ASN][1000 genomes]
rs4945966	0.83[ASN][1000 genomes]
rs4945967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4945968	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs773692	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9374415	0.82[ASN][1000 genomes]
rs9374416	0.83[ASN][1000 genomes]
rs9374417	0.83[ASN][1000 genomes]
rs9374420	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9387167	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9400653	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9400656	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113996400-114004600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:113997400-114004200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:113997400-114005600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:113999000-114007000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:114002600-114004400	Weak transcription	HepG2	liver
6	chr6:114002800-114004000	Enhancers	Stomach Mucosa	stomach
7	chr6:114003000-114005600	Weak transcription	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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