Variant report

Variant	rs4945964
Chromosome Location	chr6:113982678-113982679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11760159	0.86[ASN][1000 genomes]
rs12176307	0.84[ASN][1000 genomes]
rs1277834	0.83[ASN][1000 genomes]
rs4945501	0.83[ASN][1000 genomes]
rs4945965	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4945966	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945967	0.84[ASN][1000 genomes]
rs4945968	0.83[ASN][1000 genomes]
rs6922998	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs773692	0.82[ASN][1000 genomes]
rs9374415	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9374416	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374417	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9387164	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9387167	0.81[ASN][1000 genomes]
rs9400653	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9400656	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113976000-113990800	Weak transcription	Psoas Muscle	Psoas
2	chr6:113976200-113982800	Weak transcription	Adipose Nuclei	Adipose
3	chr6:113977600-113983000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:113979600-113983800	Enhancers	GM12878-XiMat	blood
5	chr6:113981000-113983400	Enhancers	Fetal Intestine Large	intestine
6	chr6:113981000-113983400	Enhancers	Fetal Intestine Small	intestine
7	chr6:113981200-113983600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:113981600-113983800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:113982000-113983800	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr6:113982200-113983800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr6:113982400-113982800	Weak transcription	Stomach Mucosa	stomach
12	chr6:113982400-113983800	Weak transcription	Primary B cells from cord blood	blood
13	chr6:113982400-113983800	Weak transcription	HepG2	liver
14	chr6:113982400-113993600	Weak transcription	Placenta	Placenta
15	chr6:113982600-113983200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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