Variant report

Variant	rs4945966
Chromosome Location	chr6:113984684-113984685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11760159	0.86[ASN][1000 genomes]
rs12176307	0.84[ASN][1000 genomes]
rs1277834	0.83[ASN][1000 genomes]
rs4142803	0.86[CHB][hapmap]
rs4945501	0.83[ASN][1000 genomes]
rs4945964	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945965	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4945967	0.84[ASN][1000 genomes]
rs4945968	0.83[ASN][1000 genomes]
rs6922998	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs773692	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs9374415	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9374416	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374417	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374420	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs9387164	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9387167	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap];0.81[ASN][1000 genomes]
rs9400653	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9400656	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4945966	RPF2	cis	cerebellum	SCAN
rs4945966	GPR6	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113976000-113990800	Weak transcription	Psoas Muscle	Psoas
2	chr6:113982400-113993600	Weak transcription	Placenta	Placenta
3	chr6:113983000-113993800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:113983400-113984800	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:113984000-113989800	Weak transcription	Adipose Nuclei	Adipose
6	chr6:113984200-113985000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr6:113984200-113993200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:113984600-113985600	Enhancers	GM12878-XiMat	blood
9	chr6:113984600-113989400	Weak transcription	HepG2	liver
10	chr6:113984600-113993800	Weak transcription	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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