Variant report

Variant	rs9374420
Chromosome Location	chr6:114014556-114014557
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:113997942..114000712-chr6:114013887..114015461,2	MCF-7	breast:
2	chr6:114009414..114019168-chr6:114176401..114180605,12	MCF-7	breast:
3	chr6:114007989..114010081-chr6:114014457..114016376,2	K562	blood:

Variant related genes	Relation type
ENSG00000155130	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12176307	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1277834	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2027301	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4142803	0.83[CEU][hapmap];0.83[CHB][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4945501	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4945967	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4945968	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs773692	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9387167	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9400653	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9400656	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114006000-114014800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:114006000-114015600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:114008400-114015200	Weak transcription	HepG2	liver
4	chr6:114010200-114015000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:114011800-114014800	Weak transcription	Stomach Mucosa	stomach
6	chr6:114012000-114015400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:114012400-114014800	Weak transcription	NHLF	lung
8	chr6:114012400-114015400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:114012400-114015400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:114012400-114016000	Weak transcription	HSMMtube	muscle
11	chr6:114012800-114014800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:114012800-114014800	Weak transcription	A549	lung
13	chr6:114012800-114014800	Weak transcription	NHDF-Ad	bronchial
14	chr6:114012800-114015400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:114012800-114015400	Weak transcription	Osteobl	bone
16	chr6:114012800-114015600	Weak transcription	HSMM	muscle
17	chr6:114012800-114016600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr6:114013000-114014800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:114013000-114014800	Weak transcription	NHEK	skin
20	chr6:114013000-114015000	Weak transcription	HMEC	breast
21	chr6:114014400-114014800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:114014400-114015000	Enhancers	Pancreas	Pancrea
23	chr6:114014400-114016400	Enhancers	Hela-S3	cervix
24	chr6:114014400-114020200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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