Variant report

Variant	rs773692
Chromosome Location	chr6:114012940-114012941
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114010238..114013079-chr6:114178419..114181540,4	MCF-7	breast:
2	chr6:114009414..114019168-chr6:114176401..114180605,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155130	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10872102	0.83[ASN][1000 genomes]
rs12176307	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1277834	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4142803	0.88[CEU][hapmap];0.82[CHB][hapmap]
rs4945501	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945964	0.82[ASN][1000 genomes]
rs4945966	0.82[ASN][1000 genomes]
rs4945967	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945968	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9374415	0.81[ASN][1000 genomes]
rs9374416	0.82[ASN][1000 genomes]
rs9374417	0.82[ASN][1000 genomes]
rs9374420	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9387167	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9400653	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9400656	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114006000-114014800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:114006000-114015600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:114008400-114015200	Weak transcription	HepG2	liver
4	chr6:114010200-114015000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:114011400-114013000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:114011600-114013000	Enhancers	HMEC	breast
7	chr6:114011600-114013000	Enhancers	NHEK	skin
8	chr6:114011600-114014400	Weak transcription	Pancreas	Pancrea
9	chr6:114011800-114014800	Weak transcription	Stomach Mucosa	stomach
10	chr6:114012000-114015400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:114012200-114014400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:114012400-114014800	Weak transcription	NHLF	lung
13	chr6:114012400-114015400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:114012400-114015400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:114012400-114016000	Weak transcription	HSMMtube	muscle
16	chr6:114012600-114014400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:114012800-114014400	Weak transcription	Hela-S3	cervix
18	chr6:114012800-114014800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:114012800-114014800	Weak transcription	A549	lung
20	chr6:114012800-114014800	Weak transcription	NHDF-Ad	bronchial
21	chr6:114012800-114015400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:114012800-114015400	Weak transcription	Osteobl	bone
23	chr6:114012800-114015600	Weak transcription	HSMM	muscle
24	chr6:114012800-114016600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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