Variant report

Variant	rs9374417
Chromosome Location	chr6:113987376-113987377
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11760159	0.86[ASN][1000 genomes]
rs12176307	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1277834	0.83[ASN][1000 genomes]
rs4945501	0.83[ASN][1000 genomes]
rs4945964	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945965	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4945966	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945967	0.84[ASN][1000 genomes]
rs4945968	0.83[ASN][1000 genomes]
rs6922998	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs773692	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs9374415	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9374416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374420	0.84[JPT][hapmap]
rs9387164	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9387167	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs9398360	0.88[AFR][1000 genomes]
rs9400653	0.84[ASN][1000 genomes]
rs9400656	0.83[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113976000-113990800	Weak transcription	Psoas Muscle	Psoas
2	chr6:113982400-113993600	Weak transcription	Placenta	Placenta
3	chr6:113983000-113993800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:113984000-113989800	Weak transcription	Adipose Nuclei	Adipose
5	chr6:113984200-113993200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:113984600-113989400	Weak transcription	HepG2	liver
7	chr6:113984600-113993800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr6:113985000-113990200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:113985600-113990200	Weak transcription	Fetal Stomach	stomach
10	chr6:113985600-113990800	Weak transcription	Ovary	ovary
11	chr6:113986000-113989400	Weak transcription	Fetal Lung	lung
12	chr6:113987200-113989400	Weak transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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