Variant report

Variant	rs1277834
Chromosome Location	chr6:114005585-114005586
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10872102	0.84[ASN][1000 genomes]
rs12176307	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4142803	0.86[CEU][hapmap];0.85[CHB][hapmap]
rs4945501	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945964	0.83[ASN][1000 genomes]
rs4945966	0.83[ASN][1000 genomes]
rs4945967	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4945968	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs773692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9374415	0.82[ASN][1000 genomes]
rs9374416	0.83[ASN][1000 genomes]
rs9374417	0.83[ASN][1000 genomes]
rs9374420	0.95[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9387167	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9400653	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9400656	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113997400-114005600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:113999000-114007000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:114003000-114005600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr6:114004200-114006200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:114004400-114008400	Enhancers	HepG2	liver
6	chr6:114004600-114006000	Enhancers	H9 Cell Line	embryonic stem cell
7	chr6:114004800-114005600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:114004800-114005600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:114004800-114005800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:114004800-114005800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:114005200-114005800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:114005200-114006600	Enhancers	HMEC	breast
13	chr6:114005400-114006000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:114005400-114006200	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr6:114005400-114006200	Enhancers	Stomach Mucosa	stomach
16	chr6:114005400-114006600	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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