Variant report

Variant	rs4240306
Chromosome Location	chr4:118322332-118322333
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10029940	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11098394	0.83[EUR][1000 genomes]
rs11729280	0.81[EUR][1000 genomes]
rs17861852	0.90[ASN][1000 genomes]
rs17861856	0.89[ASN][1000 genomes]
rs17861857	0.89[ASN][1000 genomes]
rs17861858	0.90[ASN][1000 genomes]
rs4834615	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7664424	0.81[ASN][1000 genomes]
rs7664551	0.84[ASN][1000 genomes]
rs7691925	0.93[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004858	chr4:118248984-118382051	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv427692	chr4:118262899-118437573	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv879825	chr4:118292314-118333367	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
4	nsv879826	chr4:118292314-118351381	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv470068	chr4:118296960-118327792	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3370581	chr4:118308398-118331294	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118321400-118322400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:118321400-118322400	Weak transcription	Brain Hippocampus Middle	brain
3	chr4:118321400-118322800	Enhancers	HSMM	muscle
4	chr4:118321600-118322400	Enhancers	HUVEC	blood vessel
5	chr4:118322000-118322400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:118322200-118322600	ZNF genes & repeats	Pancreas	Pancrea
7	chr4:118322200-118322800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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