Variant report
| Variant | rs7691925 |
|---|---|
| Chromosome Location | chr4:118333886-118333887 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr4:118333842-118334173 | K562 | blood: | n/a | chr4:118334008-118334019 |
| 2 | CEBPB | chr4:118333846-118334182 | HepG2 | liver: | n/a | chr4:118334008-118334019 |
| 3 | CEBPB | chr4:118333852-118334143 | A549 | lung: | n/a | chr4:118334008-118334019 |
| 4 | CEBPB | chr4:118333829-118334187 | IMR90 | lung: | n/a | chr4:118334008-118334019 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RPSAP35 | TF binding region |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs10029940 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11098391 | 0.90[JPT][hapmap] |
| rs11098392 | 0.91[JPT][hapmap] |
| rs11098393 | 0.90[JPT][hapmap] |
| rs11721879 | 0.86[JPT][hapmap] |
| rs11722043 | 0.91[JPT][hapmap] |
| rs11722980 | 0.90[JPT][hapmap] |
| rs11723026 | 0.91[JPT][hapmap] |
| rs11723116 | 0.90[JPT][hapmap] |
| rs11726324 | 0.91[JPT][hapmap] |
| rs11727287 | 0.91[JPT][hapmap] |
| rs11727350 | 0.90[JPT][hapmap] |
| rs11729803 | 0.91[JPT][hapmap] |
| rs17861177 | 0.90[JPT][hapmap] |
| rs17861779 | 0.86[JPT][hapmap] |
| rs17861780 | 0.86[JPT][hapmap] |
| rs17861786 | 0.91[JPT][hapmap] |
| rs17861788 | 0.91[JPT][hapmap] |
| rs17861793 | 0.91[JPT][hapmap] |
| rs17861795 | 0.91[JPT][hapmap] |
| rs17861796 | 0.91[JPT][hapmap] |
| rs17861852 | 0.90[ASN][1000 genomes] |
| rs17861856 | 0.89[ASN][1000 genomes] |
| rs17861857 | 0.89[ASN][1000 genomes] |
| rs17861858 | 0.90[ASN][1000 genomes] |
| rs17864921 | 0.91[JPT][hapmap] |
| rs17865971 | 0.91[JPT][hapmap] |
| rs4240306 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4318720 | 0.85[CHB][hapmap];0.86[JPT][hapmap] |
| rs4403116 | 0.90[JPT][hapmap] |
| rs4413475 | 0.91[JPT][hapmap] |
| rs4521417 | 0.91[JPT][hapmap] |
| rs4554147 | 0.81[JPT][hapmap] |
| rs4576084 | 0.91[JPT][hapmap] |
| rs4834615 | 0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7664424 | 0.81[ASN][1000 genomes] |
| rs7664551 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1004858 | chr4:118248984-118382051 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv427692 | chr4:118262899-118437573 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv879826 | chr4:118292314-118351381 | Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
