Variant report

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11098391	0.90[JPT][hapmap]
rs11098392	0.91[JPT][hapmap]
rs11098393	0.90[JPT][hapmap]
rs11721879	0.86[JPT][hapmap]
rs11722043	0.91[JPT][hapmap]
rs11722980	0.90[JPT][hapmap]
rs11723026	0.91[JPT][hapmap]
rs11723116	0.90[JPT][hapmap]
rs11726324	0.95[JPT][hapmap]
rs11727287	0.90[JPT][hapmap]
rs11727350	0.90[JPT][hapmap]
rs11729803	0.91[JPT][hapmap]
rs17861177	0.90[JPT][hapmap]
rs17861779	0.85[JPT][hapmap]
rs17861780	0.86[JPT][hapmap]
rs17861786	0.91[JPT][hapmap]
rs17861788	0.91[JPT][hapmap]
rs17861793	0.91[JPT][hapmap]
rs17861795	0.91[JPT][hapmap]
rs17861796	0.91[JPT][hapmap]
rs17861852	0.89[ASN][1000 genomes]
rs17861856	0.90[ASN][1000 genomes]
rs17861857	0.90[ASN][1000 genomes]
rs17861858	0.89[ASN][1000 genomes]
rs17864921	0.91[JPT][hapmap]
rs17865971	0.91[JPT][hapmap]
rs4240306	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4318720	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs4403116	0.90[JPT][hapmap]
rs4413475	0.91[JPT][hapmap]
rs4521417	0.91[JPT][hapmap]
rs4554147	0.86[JPT][hapmap]
rs4576084	0.91[JPT][hapmap]
rs4834615	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7664424	0.80[ASN][1000 genomes]
rs7664551	0.83[ASN][1000 genomes]
rs7691925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004858	chr4:118248984-118382051	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv427692	chr4:118262899-118437573	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv879825	chr4:118292314-118333367	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
4	nsv879826	chr4:118292314-118351381	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv470068	chr4:118296960-118327792	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3370581	chr4:118308398-118331294	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118307200-118321000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:118313800-118322200	Weak transcription	Pancreas	Pancrea

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