Variant report
| Variant | rs17861852 |
|---|---|
| Chromosome Location | chr4:118318166-118318167 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10029940 | 0.89[ASN][1000 genomes] |
| rs12648816 | 0.86[ASN][1000 genomes] |
| rs12650869 | 0.82[ASN][1000 genomes] |
| rs17861856 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs17861857 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs17861858 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17861881 | 0.88[ASN][1000 genomes] |
| rs17861883 | 0.86[ASN][1000 genomes] |
| rs17861890 | 0.83[ASN][1000 genomes] |
| rs17861891 | 0.82[ASN][1000 genomes] |
| rs17861906 | 0.82[ASN][1000 genomes] |
| rs17861907 | 0.82[ASN][1000 genomes] |
| rs17861908 | 0.82[ASN][1000 genomes] |
| rs17865437 | 0.86[ASN][1000 genomes] |
| rs17866964 | 0.86[ASN][1000 genomes] |
| rs17869806 | 0.82[ASN][1000 genomes] |
| rs17874735 | 0.80[ASN][1000 genomes] |
| rs4240306 | 0.90[ASN][1000 genomes] |
| rs4318720 | 1.00[CEU][hapmap] |
| rs4493615 | 0.82[ASN][1000 genomes] |
| rs4546314 | 0.86[ASN][1000 genomes] |
| rs4619965 | 0.86[ASN][1000 genomes] |
| rs4834615 | 0.82[ASN][1000 genomes] |
| rs6840658 | 0.82[ASN][1000 genomes] |
| rs6840964 | 0.82[ASN][1000 genomes] |
| rs6856237 | 0.86[ASN][1000 genomes] |
| rs7664424 | 0.82[ASN][1000 genomes] |
| rs7664551 | 0.82[ASN][1000 genomes] |
| rs7691925 | 0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1004858 | chr4:118248984-118382051 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv427692 | chr4:118262899-118437573 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv879825 | chr4:118292314-118333367 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | n/a |
| 4 | nsv879826 | chr4:118292314-118351381 | Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 5 | nsv470068 | chr4:118296960-118327792 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 6 | esv3370581 | chr4:118308398-118331294 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:118307200-118321000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr4:118313800-118322200 | Weak transcription | Pancreas | Pancrea |
