Variant report

Variant	rs17861881
Chromosome Location	chr4:118335336-118335337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NDST3-10	chr4:118334618-118335435	NONHSAT097958

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11098391	0.81[JPT][hapmap]
rs11098392	0.81[JPT][hapmap]
rs11098393	0.84[JPT][hapmap]
rs11722043	0.81[JPT][hapmap]
rs11722980	0.80[JPT][hapmap]
rs11723026	0.81[JPT][hapmap]
rs11723116	0.81[JPT][hapmap]
rs11727287	0.81[JPT][hapmap]
rs11727350	0.80[JPT][hapmap]
rs11729803	0.81[JPT][hapmap]
rs12648816	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12649487	0.83[ASN][1000 genomes]
rs12650869	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17861177	0.80[JPT][hapmap]
rs17861786	0.81[JPT][hapmap]
rs17861788	0.81[JPT][hapmap]
rs17861793	0.81[JPT][hapmap]
rs17861795	0.81[JPT][hapmap]
rs17861796	0.81[JPT][hapmap]
rs17861852	0.88[ASN][1000 genomes]
rs17861856	0.87[ASN][1000 genomes]
rs17861857	0.87[ASN][1000 genomes]
rs17861858	0.88[ASN][1000 genomes]
rs17861883	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17861890	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17861891	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17861906	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17861907	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17861908	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17864921	0.81[JPT][hapmap]
rs17865437	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17865971	0.81[JPT][hapmap]
rs17866964	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17869806	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17874735	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4318720	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs4403116	0.81[JPT][hapmap]
rs4413475	0.81[JPT][hapmap]
rs4493615	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4521417	0.81[JPT][hapmap]
rs4529127	0.83[ASN][1000 genomes]
rs4546314	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4576084	0.81[JPT][hapmap]
rs4619965	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6534034	0.83[ASN][1000 genomes]
rs6840658	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6840964	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6856237	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7664424	0.91[ASN][1000 genomes]
rs7664551	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004858	chr4:118248984-118382051	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv427692	chr4:118262899-118437573	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv879826	chr4:118292314-118351381	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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