Variant report

Variant	rs6534034
Chromosome Location	chr4:118340767-118340768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11098391	0.81[JPT][hapmap]
rs11098392	0.81[JPT][hapmap]
rs11098393	0.84[JPT][hapmap]
rs11722043	0.81[JPT][hapmap]
rs11723026	0.81[JPT][hapmap]
rs11723116	0.81[JPT][hapmap]
rs11727287	0.80[JPT][hapmap]
rs11729803	0.81[JPT][hapmap]
rs12648816	0.87[ASN][1000 genomes]
rs12649487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12650869	0.84[ASN][1000 genomes]
rs13123675	0.91[ASN][1000 genomes]
rs17861786	0.81[JPT][hapmap]
rs17861788	0.81[JPT][hapmap]
rs17861793	0.81[JPT][hapmap]
rs17861795	0.81[JPT][hapmap]
rs17861796	0.81[JPT][hapmap]
rs17861881	0.83[ASN][1000 genomes]
rs17861883	0.87[ASN][1000 genomes]
rs17861890	0.85[ASN][1000 genomes]
rs17861891	0.84[ASN][1000 genomes]
rs17861906	0.84[ASN][1000 genomes]
rs17861907	0.84[ASN][1000 genomes]
rs17861908	0.84[ASN][1000 genomes]
rs17864921	0.81[JPT][hapmap]
rs17865437	0.87[ASN][1000 genomes]
rs17865971	0.81[JPT][hapmap]
rs17866964	0.87[ASN][1000 genomes]
rs17869806	0.84[ASN][1000 genomes]
rs17874735	0.82[ASN][1000 genomes]
rs4318720	0.86[JPT][hapmap]
rs4397069	0.91[ASN][1000 genomes]
rs4403116	0.81[JPT][hapmap]
rs4413475	0.81[JPT][hapmap]
rs4493615	0.84[ASN][1000 genomes]
rs4521417	0.81[JPT][hapmap]
rs4529127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4546314	0.87[ASN][1000 genomes]
rs4576084	0.81[JPT][hapmap]
rs4619965	0.87[ASN][1000 genomes]
rs6834348	0.95[ASN][1000 genomes]
rs6840658	0.84[ASN][1000 genomes]
rs6840964	0.84[ASN][1000 genomes]
rs6856237	0.87[ASN][1000 genomes]
rs7664424	0.83[ASN][1000 genomes]
rs7664551	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004858	chr4:118248984-118382051	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv427692	chr4:118262899-118437573	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv879826	chr4:118292314-118351381	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6534034	PRSS12	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118338600-118341800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:118339800-118350800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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