Variant report
| Variant | rs4529127 |
|---|---|
| Chromosome Location | chr4:118341442-118341443 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs11098393 | 0.83[JPT][hapmap] |
| rs12648816 | 0.87[ASN][1000 genomes] |
| rs12649487 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12650869 | 0.84[ASN][1000 genomes] |
| rs13123675 | 0.91[ASN][1000 genomes] |
| rs17861881 | 0.83[ASN][1000 genomes] |
| rs17861883 | 0.87[ASN][1000 genomes] |
| rs17861890 | 0.85[ASN][1000 genomes] |
| rs17861891 | 0.84[ASN][1000 genomes] |
| rs17861906 | 0.84[ASN][1000 genomes] |
| rs17861907 | 0.84[ASN][1000 genomes] |
| rs17861908 | 0.84[ASN][1000 genomes] |
| rs17865437 | 0.87[ASN][1000 genomes] |
| rs17866964 | 0.87[ASN][1000 genomes] |
| rs17869806 | 0.84[ASN][1000 genomes] |
| rs17874735 | 0.82[ASN][1000 genomes] |
| rs4318720 | 0.85[JPT][hapmap] |
| rs4397069 | 0.91[ASN][1000 genomes] |
| rs4493615 | 0.84[ASN][1000 genomes] |
| rs4546314 | 0.87[ASN][1000 genomes] |
| rs4619965 | 0.87[ASN][1000 genomes] |
| rs6534034 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6834348 | 0.95[ASN][1000 genomes] |
| rs6840658 | 0.84[ASN][1000 genomes] |
| rs6840964 | 0.84[ASN][1000 genomes] |
| rs6856237 | 0.87[ASN][1000 genomes] |
| rs7664424 | 0.83[ASN][1000 genomes] |
| rs7664551 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1004858 | chr4:118248984-118382051 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv427692 | chr4:118262899-118437573 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv879826 | chr4:118292314-118351381 | Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:118338600-118341800 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 2 | chr4:118339800-118350800 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
