Variant report

Variant	rs4318720
Chromosome Location	chr4:118332255-118332256
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10029940	0.89[ASN][1000 genomes]
rs11098391	0.95[JPT][hapmap]
rs11098392	0.95[JPT][hapmap]
rs11098393	0.95[JPT][hapmap]
rs11721879	0.90[JPT][hapmap]
rs11722043	0.95[JPT][hapmap]
rs11722980	0.95[JPT][hapmap]
rs11723026	0.95[JPT][hapmap]
rs11723116	0.95[JPT][hapmap]
rs11726324	0.86[JPT][hapmap]
rs11727287	0.95[JPT][hapmap]
rs11727350	0.95[JPT][hapmap]
rs11729803	0.95[JPT][hapmap]
rs12648816	0.86[ASN][1000 genomes]
rs12650869	0.82[ASN][1000 genomes]
rs17861177	0.95[JPT][hapmap]
rs17861779	0.89[JPT][hapmap]
rs17861780	0.90[JPT][hapmap]
rs17861786	0.95[JPT][hapmap]
rs17861788	0.95[JPT][hapmap]
rs17861793	0.95[JPT][hapmap]
rs17861795	0.95[JPT][hapmap]
rs17861796	0.95[JPT][hapmap]
rs17861852	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17861856	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17861857	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17861858	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17861881	0.88[ASN][1000 genomes]
rs17861883	0.86[ASN][1000 genomes]
rs17861890	0.83[ASN][1000 genomes]
rs17861891	0.82[ASN][1000 genomes]
rs17861906	0.82[ASN][1000 genomes]
rs17861907	0.82[ASN][1000 genomes]
rs17861908	0.82[ASN][1000 genomes]
rs17864921	0.95[JPT][hapmap]
rs17865437	0.86[ASN][1000 genomes]
rs17865971	0.95[JPT][hapmap]
rs17866964	0.86[ASN][1000 genomes]
rs17869806	0.82[ASN][1000 genomes]
rs17874735	0.80[ASN][1000 genomes]
rs4240306	0.90[ASN][1000 genomes]
rs4403116	0.95[JPT][hapmap]
rs4413475	0.95[JPT][hapmap]
rs4493615	0.82[ASN][1000 genomes]
rs4521417	0.95[JPT][hapmap]
rs4546314	0.86[ASN][1000 genomes]
rs4554147	0.85[JPT][hapmap]
rs4576084	0.95[JPT][hapmap]
rs4619965	0.86[ASN][1000 genomes]
rs4834615	0.82[ASN][1000 genomes]
rs6840658	0.82[ASN][1000 genomes]
rs6840964	0.82[ASN][1000 genomes]
rs6856237	0.86[ASN][1000 genomes]
rs7664424	0.82[ASN][1000 genomes]
rs7664551	0.82[ASN][1000 genomes]
rs7691925	0.85[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004858	chr4:118248984-118382051	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv427692	chr4:118262899-118437573	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv879825	chr4:118292314-118333367	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
4	nsv879826	chr4:118292314-118351381	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
QT interval	20031603	GWAS catalog

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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