Variant report

Variant	rs4312666
Chromosome Location	chr3:85718305-85718306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11127905	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12494196	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17334733	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1947180	0.93[EUR][1000 genomes]
rs2017676	0.93[EUR][1000 genomes]
rs2029051	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2029052	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2029053	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4129298	0.99[EUR][1000 genomes]
rs4298053	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4320069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4482674	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4618235	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6549048	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6781999	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73142855	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73147238	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73147239	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73147242	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7624423	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9820133	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9820262	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9844720	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9878917	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002238	chr3:85357855-85719373	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536619	chr3:85357855-85719373	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv877104	chr3:85646426-85737646	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85712800-85719600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:85714800-85719800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:85717800-85718400	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:85718200-85719000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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