Variant report

Variant	rs1947180
Chromosome Location	chr3:85752530-85752531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10511074	0.84[CEU][hapmap];0.94[TSI][hapmap]
rs10511079	0.88[TSI][hapmap]
rs11127905	1.00[CEU][hapmap];0.81[JPT][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes]
rs12494196	1.00[CEU][hapmap];0.81[JPT][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes]
rs17334733	0.81[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17460638	0.88[TSI][hapmap]
rs2017676	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2029051	1.00[CEU][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2029052	1.00[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2029053	1.00[CEU][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2044654	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap]
rs4129298	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4298053	0.94[EUR][1000 genomes]
rs4302392	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[TSI][hapmap]
rs4305433	0.94[CEU][hapmap]
rs4312666	0.93[EUR][1000 genomes]
rs4320069	0.93[EUR][1000 genomes]
rs4435654	0.95[CEU][hapmap]
rs4482674	0.87[EUR][1000 genomes]
rs4618235	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6549047	0.95[CEU][hapmap]
rs6549048	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6781999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6794759	0.88[TSI][hapmap]
rs6797840	0.89[CHB][hapmap]
rs73142855	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73147238	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73147239	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73147242	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7615964	0.84[CEU][hapmap]
rs7624423	1.00[CEU][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs9820133	1.00[CEU][hapmap];0.81[JPT][hapmap];0.94[EUR][1000 genomes]
rs9820262	1.00[CEU][hapmap];0.81[JPT][hapmap];0.94[EUR][1000 genomes]
rs9844720	1.00[CEU][hapmap];0.89[JPT][hapmap];0.94[EUR][1000 genomes]
rs9860249	1.00[CEU][hapmap];0.97[TSI][hapmap]
rs9867437	0.93[CHB][hapmap]
rs9878917	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1005102	chr3:85729640-85829412	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85748800-85753200	Weak transcription	Brain Hippocampus Middle	brain
2	chr3:85751200-85753400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:85752000-85752600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:85752400-85753200	Enhancers	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links