Variant report

Variant	rs73147239
Chromosome Location	chr3:85757553-85757554
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11127905	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12494196	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17334733	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1947180	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2017676	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2029051	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2029052	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2029053	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4129298	0.94[EUR][1000 genomes]
rs4298053	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4312666	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4320069	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4482674	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4618235	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6549048	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6781999	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73142855	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73147238	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73147242	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7624423	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9820133	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9820262	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9844720	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9878917	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1005102	chr3:85729640-85829412	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85753600-85758600	Weak transcription	Brain Hippocampus Middle	brain
2	chr3:85755600-85759200	Weak transcription	Brain Germinal Matrix	brain
3	chr3:85756800-85758600	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr3:85756800-85759200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr3:85757000-85759000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:85757000-85759200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr3:85757000-85759200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:85757200-85758800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr3:85757400-85757800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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