Variant report

Variant	rs9878917
Chromosome Location	chr3:85706677-85706678
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10511074	0.81[EUR][1000 genomes]
rs11127905	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12494196	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17334733	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1947180	0.88[EUR][1000 genomes]
rs2017676	0.88[EUR][1000 genomes]
rs2029051	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2029052	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2029053	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4129298	0.92[EUR][1000 genomes]
rs4298053	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4312666	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4320069	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4416395	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4481168	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4482674	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4618235	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6549048	0.92[EUR][1000 genomes]
rs6781999	0.92[EUR][1000 genomes]
rs73142855	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73147238	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73147239	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73147242	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7624423	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9820133	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9820262	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9844720	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002238	chr3:85357855-85719373	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536619	chr3:85357855-85719373	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv877101	chr3:85619451-85710336	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv877104	chr3:85646426-85737646	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85695400-85708800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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