Variant report
| Variant | rs6549048 |
|---|---|
| Chromosome Location | chr3:85733205-85733206 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11127905 | 0.99[EUR][1000 genomes] |
| rs12494196 | 0.99[EUR][1000 genomes] |
| rs17334733 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs1947180 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2017676 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2029051 | 0.91[EUR][1000 genomes] |
| rs2029052 | 0.91[EUR][1000 genomes] |
| rs2029053 | 0.91[EUR][1000 genomes] |
| rs4129298 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4298053 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4312666 | 0.80[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs4320069 | 0.80[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs4482674 | 0.91[EUR][1000 genomes] |
| rs4618235 | 0.92[EUR][1000 genomes] |
| rs6781999 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs73142855 | 0.90[EUR][1000 genomes] |
| rs73147238 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs73147239 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs73147242 | 0.92[EUR][1000 genomes] |
| rs7624423 | 0.91[EUR][1000 genomes] |
| rs9820133 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9820262 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs9844720 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9878917 | 0.92[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv590905 | chr3:85438564-85797093 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv1010541 | chr3:85505839-85870597 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv536625 | chr3:85505839-85870597 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv877104 | chr3:85646426-85737646 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv1005102 | chr3:85729640-85829412 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:85731400-85736800 | Weak transcription | Brain Hippocampus Middle | brain |
