Variant report

Variant	rs4361988
Chromosome Location	chr1:152229716-152229717
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10749668	1.00[MEX][hapmap]
rs11801344	0.86[AFR][1000 genomes]
rs12075239	1.00[ASN][1000 genomes]
rs1390489	1.00[MEX][hapmap]
rs1858481	0.88[ASW][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap]
rs2036101	0.94[ASW][hapmap]
rs3120641	0.91[AFR][1000 genomes]
rs3120649	0.88[YRI][hapmap]
rs3126052	0.89[AFR][1000 genomes]
rs3126061	0.88[AFR][1000 genomes]
rs3126065	0.94[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs3126082	0.89[YRI][hapmap]
rs3126087	0.88[ASW][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap]
rs3134871	0.88[ASW][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap]
rs3134872	0.94[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.89[YRI][hapmap];1.00[ASN][1000 genomes]
rs6587655	0.94[ASW][hapmap]
rs9436059	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv547853	chr1:152008671-152236760	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv1014095	chr1:152104486-152454591	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv946325	chr1:152221751-152240196	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS	lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152219400-152230200	Weak transcription	Ovary	ovary
2	chr1:152220800-152230400	Weak transcription	Brain Angular Gyrus	brain
3	chr1:152223200-152230400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr1:152224600-152230400	Weak transcription	Fetal Kidney	kidney
5	chr1:152225400-152232200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:152225600-152232200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:152229400-152230200	Weak transcription	Aorta	Aorta
8	chr1:152229600-152230800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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