Variant report

Variant	rs437168
Chromosome Location	chr19:36334419-36334420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:36333824..36336431-chr19:36543842..36546200,2	MCF-7	breast:
2	chr19:36275329..36277480-chr19:36333651..36336401,3	K562	blood:
3	chr19:36333306..36335125-chr19:36337334..36339414,2	K562	blood:

Variant related genes	Relation type
ENSG00000075702	Chromatin interaction
ENSG00000004777	Chromatin interaction
ENSG00000161277	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11084834	1.00[CEU][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs11880909	1.00[CEU][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs11881358	0.82[EUR][1000 genomes]
rs11881364	0.82[EUR][1000 genomes]
rs11881451	1.00[CEU][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs16970735	0.82[EUR][1000 genomes]
rs16970737	1.00[CEU][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs16970742	1.00[CEU][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs16970744	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs172985	1.00[CEU][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs2227909	1.00[CEU][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs2285450	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs230260	1.00[CEU][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes]
rs230261	1.00[CEU][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs230262	1.00[CEU][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs230263	0.82[EUR][1000 genomes]
rs230264	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs230265	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs230266	0.82[EUR][1000 genomes]
rs230267	0.82[EUR][1000 genomes]
rs230269	0.82[EUR][1000 genomes]
rs2871778	1.00[CEU][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs34006827	0.82[EUR][1000 genomes]
rs35423326	0.82[EUR][1000 genomes]
rs376240	1.00[CEU][hapmap];0.85[TSI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs392702	1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs393116	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs401824	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.91[LWK][hapmap];0.85[TSI][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs404299	0.89[ASW][hapmap];1.00[CEU][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs412175	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs417786	0.95[EUR][1000 genomes]
rs443186	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.91[LWK][hapmap];0.85[TSI][hapmap];0.80[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs447783	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55797913	0.82[EUR][1000 genomes]
rs55816190	0.82[EUR][1000 genomes]
rs56117924	0.95[ASN][1000 genomes]
rs56264349	0.82[AMR][1000 genomes]
rs56971278	0.86[EUR][1000 genomes]
rs57053076	0.82[EUR][1000 genomes]
rs57668132	0.82[EUR][1000 genomes]
rs58098901	0.82[EUR][1000 genomes]
rs58109577	0.82[EUR][1000 genomes]
rs59123406	0.82[EUR][1000 genomes]
rs59582363	0.94[ASN][1000 genomes]
rs59658571	0.82[EUR][1000 genomes]
rs61623584	0.82[EUR][1000 genomes]
rs619833	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7248157	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7251744	0.82[EUR][1000 genomes]
rs7258909	1.00[CEU][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs73594463	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73928332	0.82[EUR][1000 genomes]
rs73928333	0.82[EUR][1000 genomes]
rs807660	0.82[EUR][1000 genomes]
rs8106732	0.82[EUR][1000 genomes]
rs8110926	0.82[EUR][1000 genomes]
rs8111209	0.82[EUR][1000 genomes]
rs8111348	0.82[EUR][1000 genomes]
rs879407	1.00[CEU][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs9749325	0.82[EUR][1000 genomes]
rs9749492	1.00[CEU][hapmap];0.85[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv911638	chr19:36265508-36537959	Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv3526489	chr19:36306483-36741945	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
4	esv3526490	chr19:36306483-36741945	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
5	esv1831737	chr19:36324324-36690874	Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
6	esv3397651	chr19:36326933-36377725	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv833812	chr19:36331913-36507594	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36330400-36334600	Weak transcription	Pancreas	Pancrea
2	chr19:36330400-36336200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr19:36334200-36336800	ZNF genes & repeats	Spleen	Spleen
4	chr19:36334400-36334800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell

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