Variant report

Variant	rs4405247
Chromosome Location	chr10:94830539-94830540
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr10:94830325-94830595	SK-N-SH_RA	brain:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94820481..94822581-chr10:94829729..94832249,3	K562	blood:
2	chr10:94813543..94815385-chr10:94829083..94832030,2	K562	blood:
3	chr10:94819837..94822581-chr10:94829729..94831832,4	K562	blood:
4	chr10:94730886..94732779-chr10:94830239..94832619,2	K562	blood:
5	chr10:94829603..94831401-chr10:94832618..94835231,2	K562	blood:
6	chr10:94829159..94830992-chr10:94834045..94836625,2	MCF-7	breast:
7	chr10:94607551..94610548-chr10:94829847..94831453,2	K562	blood:
8	chr10:94588398..94591090-chr10:94830057..94832892,2	K562	blood:

No data

No data

No data

Variant related genes	Relation type
CYP26A1	TF binding region
ENSG00000095596	Chromatin interaction
ENSG00000187553	Chromatin interaction
ENSG00000226425	Chromatin interaction
ENSG00000138190	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs35630863	0.89[ASN][1000 genomes]
rs4581378	0.89[ASN][1000 genomes]
rs58993699	0.89[ASN][1000 genomes]
rs73317384	0.89[ASN][1000 genomes]
rs73319347	0.89[ASN][1000 genomes]
rs73319398	0.89[ASN][1000 genomes]
rs835258	0.89[ASN][1000 genomes]
rs835260	0.89[ASN][1000 genomes]
rs835261	0.89[ASN][1000 genomes]
rs835262	0.89[ASN][1000 genomes]
rs835263	0.89[ASN][1000 genomes]
rs844341	0.89[ASN][1000 genomes]
rs9419761	0.89[ASN][1000 genomes]
rs9420607	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802015	chr10:94811983-94839960	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv895899	chr10:94818382-94836435	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94828800-94831600	Weak transcription	Gastric	stomach
2	chr10:94829000-94831400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:94829800-94830800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr10:94830000-94831400	Weak transcription	Right Atrium	heart
5	chr10:94830200-94830800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:94830200-94831000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:94830200-94831400	Enhancers	Pancreas	Pancrea
8	chr10:94830200-94831600	Enhancers	A549	lung
9	chr10:94830400-94830600	Bivalent Enhancer	Right Ventricle	heart
10	chr10:94830400-94830600	Bivalent Enhancer	Spleen	Spleen
11	chr10:94830400-94830800	Enhancers	K562	blood
12	chr10:94830400-94831000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:94830400-94831000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
14	chr10:94830400-94831200	Bivalent Enhancer	Fetal Brain Male	brain
15	chr10:94830400-94831400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
16	chr10:94830400-94831400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:94830400-94831600	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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