Variant report

Variant	rs4581378
Chromosome Location	chr10:94830782-94830783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr10:94830731-94831276	K562	blood:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:94820481..94822581-chr10:94829729..94832249,3	K562	blood:
2	chr10:94813543..94815385-chr10:94829083..94832030,2	K562	blood:
3	chr10:94819837..94822581-chr10:94829729..94831832,4	K562	blood:
4	chr10:94730886..94732779-chr10:94830239..94832619,2	K562	blood:
5	chr10:94829603..94831401-chr10:94832618..94835231,2	K562	blood:
6	chr10:94829159..94830992-chr10:94834045..94836625,2	MCF-7	breast:
7	chr10:94607551..94610548-chr10:94829847..94831453,2	K562	blood:
8	chr10:94588398..94591090-chr10:94830057..94832892,2	K562	blood:
9	chr10:94830658..94833124-chr10:94835303..94840164,8	K562	blood:

No data

Variant related genes	Relation type
CYP26A1	TF binding region
ENSG00000187553	Chromatin interaction
ENSG00000226425	Chromatin interaction
ENSG00000138190	Chromatin interaction
ENSG00000095596	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10748590	0.89[ASN][1000 genomes]
rs11187260	0.89[ASN][1000 genomes]
rs1222605	0.89[ASN][1000 genomes]
rs12263200	0.89[ASN][1000 genomes]
rs12358168	0.89[ASN][1000 genomes]
rs1238178	0.89[ASN][1000 genomes]
rs12416051	0.89[ASN][1000 genomes]
rs1339820	0.89[ASN][1000 genomes]
rs1750741	0.89[ASN][1000 genomes]
rs2478238	0.89[ASN][1000 genomes]
rs2486682	0.89[ASN][1000 genomes]
rs2486683	0.89[ASN][1000 genomes]
rs2486686	0.89[ASN][1000 genomes]
rs2486687	0.89[ASN][1000 genomes]
rs35630863	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4405247	0.89[ASN][1000 genomes]
rs4917898	0.89[ASN][1000 genomes]
rs55856996	0.89[ASN][1000 genomes]
rs58993699	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59539045	0.89[ASN][1000 genomes]
rs61863079	0.89[ASN][1000 genomes]
rs61863080	0.89[ASN][1000 genomes]
rs61863087	0.89[ASN][1000 genomes]
rs73317384	1.00[ASN][1000 genomes]
rs73319304	0.89[ASN][1000 genomes]
rs73319347	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319398	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895700	0.89[ASN][1000 genomes]
rs835256	0.89[ASN][1000 genomes]
rs835257	0.89[ASN][1000 genomes]
rs835258	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835260	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835261	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835262	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835263	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835265	0.89[ASN][1000 genomes]
rs835269	0.89[ASN][1000 genomes]
rs835270	0.89[ASN][1000 genomes]
rs835271	0.89[ASN][1000 genomes]
rs835274	0.89[ASN][1000 genomes]
rs835275	0.89[ASN][1000 genomes]
rs835277	0.89[ASN][1000 genomes]
rs835280	0.89[ASN][1000 genomes]
rs844341	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs860669	0.89[ASN][1000 genomes]
rs9419761	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9419763	0.89[ASN][1000 genomes]
rs9419765	0.89[ASN][1000 genomes]
rs9419766	0.89[ASN][1000 genomes]
rs9420603	0.89[ASN][1000 genomes]
rs9420607	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9420608	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802015	chr10:94811983-94839960	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv895899	chr10:94818382-94836435	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94828800-94831600	Weak transcription	Gastric	stomach
2	chr10:94829000-94831400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:94829800-94830800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr10:94830000-94831400	Weak transcription	Right Atrium	heart
5	chr10:94830200-94830800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:94830200-94831000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:94830200-94831400	Enhancers	Pancreas	Pancrea
8	chr10:94830200-94831600	Enhancers	A549	lung
9	chr10:94830400-94830800	Enhancers	K562	blood
10	chr10:94830400-94831000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:94830400-94831000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
12	chr10:94830400-94831200	Bivalent Enhancer	Fetal Brain Male	brain
13	chr10:94830400-94831400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
14	chr10:94830400-94831400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:94830400-94831600	Enhancers	Liver	Liver
16	chr10:94830600-94830800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
17	chr10:94830600-94831000	Bivalent Enhancer	HepG2	liver

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