Variant report

Variant	rs73319398
Chromosome Location	chr10:94835325-94835326
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94830658..94833124-chr10:94835303..94840164,8	K562	blood:
2	chr10:94833837..94835428-chr10:94886168..94888250,2	MCF-7	breast:
3	chr10:94829159..94830992-chr10:94834045..94836625,2	MCF-7	breast:
4	chr10:94833682..94835743-chr10:94838444..94841738,3	K562	blood:
5	chr10:94674000..94675687-chr10:94834281..94836039,2	K562	blood:
6	chr10:94833787..94835758-chr10:94855564..94858078,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10748590	0.89[ASN][1000 genomes]
rs11187260	0.89[ASN][1000 genomes]
rs1222605	0.89[ASN][1000 genomes]
rs12263200	0.89[ASN][1000 genomes]
rs12358168	0.89[ASN][1000 genomes]
rs1238178	0.89[ASN][1000 genomes]
rs12416051	0.89[ASN][1000 genomes]
rs1339820	0.89[ASN][1000 genomes]
rs1750741	0.89[ASN][1000 genomes]
rs2478238	0.89[ASN][1000 genomes]
rs2486682	0.89[ASN][1000 genomes]
rs2486683	0.89[ASN][1000 genomes]
rs2486686	0.89[ASN][1000 genomes]
rs2486687	0.89[ASN][1000 genomes]
rs35630863	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4405247	0.89[ASN][1000 genomes]
rs4581378	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4917898	0.89[ASN][1000 genomes]
rs55856996	0.89[ASN][1000 genomes]
rs58993699	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59539045	0.89[ASN][1000 genomes]
rs61863079	0.89[ASN][1000 genomes]
rs61863080	0.89[ASN][1000 genomes]
rs61863087	0.89[ASN][1000 genomes]
rs73317384	1.00[ASN][1000 genomes]
rs73319304	0.89[ASN][1000 genomes]
rs73319347	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895700	0.89[ASN][1000 genomes]
rs835256	0.89[ASN][1000 genomes]
rs835257	0.89[ASN][1000 genomes]
rs835258	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835260	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835261	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835262	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835263	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835265	0.89[ASN][1000 genomes]
rs835269	0.89[ASN][1000 genomes]
rs835270	0.89[ASN][1000 genomes]
rs835271	0.89[ASN][1000 genomes]
rs835274	0.89[ASN][1000 genomes]
rs835275	0.89[ASN][1000 genomes]
rs835277	0.89[ASN][1000 genomes]
rs835280	0.89[ASN][1000 genomes]
rs844341	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs860669	0.89[ASN][1000 genomes]
rs9419761	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9419763	0.89[ASN][1000 genomes]
rs9419765	0.89[ASN][1000 genomes]
rs9419766	0.89[ASN][1000 genomes]
rs9420603	0.89[ASN][1000 genomes]
rs9420607	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9420608	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802015	chr10:94811983-94839960	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv895899	chr10:94818382-94836435	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94831400-94835400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
2	chr10:94831600-94835400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
3	chr10:94831600-94835400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:94831600-94835400	Flanking Active TSS	Liver	Liver
5	chr10:94831600-94835800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
6	chr10:94831800-94836000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:94832400-94835400	Bivalent Enhancer	Placenta	Placenta
8	chr10:94833200-94836000	Active TSS	Breast Myoepithelial Primary Cells	Breast
9	chr10:94833200-94836400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
10	chr10:94834000-94835400	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:94834000-94836000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
12	chr10:94834000-94836000	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood
13	chr10:94834200-94835400	Bivalent Enhancer	Fetal Stomach	stomach
14	chr10:94834200-94835600	Bivalent Enhancer	Fetal Heart	heart
15	chr10:94834200-94836000	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:94834200-94838200	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:94834400-94835400	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
18	chr10:94834400-94835600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
19	chr10:94834600-94835400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
20	chr10:94834600-94835400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
21	chr10:94834600-94835400	Bivalent Enhancer	HSMM	muscle
22	chr10:94834800-94835400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
23	chr10:94834800-94835400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr10:94834800-94836000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
25	chr10:94834800-94836800	Enhancers	HSMMtube	muscle
26	chr10:94835000-94835400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
27	chr10:94835000-94835400	Enhancers	A549	lung
28	chr10:94835000-94835600	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
29	chr10:94835000-94835600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr10:94835000-94836200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr10:94835000-94837000	Bivalent/Poised TSS	Fetal Brain Female	brain
32	chr10:94835200-94835400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:94835200-94835400	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr10:94835200-94835400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr10:94835200-94835400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
36	chr10:94835200-94835600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:94835200-94835600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr10:94835200-94835600	Bivalent Enhancer	Primary hematopoietic stem cells	blood
39	chr10:94835200-94835600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
40	chr10:94835200-94835600	Bivalent Enhancer	NH-A	brain
41	chr10:94835200-94835800	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr10:94835200-94835800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
43	chr10:94835200-94836000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
44	chr10:94835200-94836000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr10:94835200-94836000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr10:94835200-94836000	Bivalent Enhancer	Colonic Mucosa	Colon
47	chr10:94835200-94836000	Bivalent Enhancer	Fetal Muscle Leg	muscle
48	chr10:94835200-94836400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell

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