Variant report

Variant	rs35630863
Chromosome Location	chr10:94833890-94833891
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94833837..94835428-chr10:94886168..94888250,2	MCF-7	breast:
2	chr10:94833682..94835743-chr10:94838444..94841738,3	K562	blood:
3	chr10:94833787..94835758-chr10:94855564..94858078,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10748590	0.89[ASN][1000 genomes]
rs11187260	0.89[ASN][1000 genomes]
rs1222605	0.89[ASN][1000 genomes]
rs12263200	0.89[ASN][1000 genomes]
rs12358168	0.89[ASN][1000 genomes]
rs1238178	0.89[ASN][1000 genomes]
rs12416051	0.89[ASN][1000 genomes]
rs1339820	0.89[ASN][1000 genomes]
rs1750741	0.89[ASN][1000 genomes]
rs2478238	0.89[ASN][1000 genomes]
rs2486682	0.89[ASN][1000 genomes]
rs2486683	0.89[ASN][1000 genomes]
rs2486686	0.89[ASN][1000 genomes]
rs2486687	0.89[ASN][1000 genomes]
rs4405247	0.89[ASN][1000 genomes]
rs4581378	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4917898	0.89[ASN][1000 genomes]
rs55856996	0.89[ASN][1000 genomes]
rs58993699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59539045	0.89[ASN][1000 genomes]
rs61863079	0.89[ASN][1000 genomes]
rs61863080	0.89[ASN][1000 genomes]
rs61863087	0.89[ASN][1000 genomes]
rs73317384	1.00[ASN][1000 genomes]
rs73319304	0.89[ASN][1000 genomes]
rs73319347	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319398	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895700	0.89[ASN][1000 genomes]
rs835256	0.89[ASN][1000 genomes]
rs835257	0.89[ASN][1000 genomes]
rs835258	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835260	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835261	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835262	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835263	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835265	0.89[ASN][1000 genomes]
rs835269	0.89[ASN][1000 genomes]
rs835270	0.89[ASN][1000 genomes]
rs835271	0.89[ASN][1000 genomes]
rs835274	0.89[ASN][1000 genomes]
rs835275	0.89[ASN][1000 genomes]
rs835277	0.89[ASN][1000 genomes]
rs835280	0.89[ASN][1000 genomes]
rs844341	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs860669	0.89[ASN][1000 genomes]
rs9419761	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9419763	0.89[ASN][1000 genomes]
rs9419765	0.89[ASN][1000 genomes]
rs9419766	0.89[ASN][1000 genomes]
rs9420603	0.89[ASN][1000 genomes]
rs9420607	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9420608	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802015	chr10:94811983-94839960	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv895899	chr10:94818382-94836435	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94831200-94834200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:94831400-94835400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr10:94831600-94834000	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
4	chr10:94831600-94834200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
5	chr10:94831600-94834400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
6	chr10:94831600-94834400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
7	chr10:94831600-94835000	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
8	chr10:94831600-94835200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:94831600-94835200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
10	chr10:94831600-94835400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
11	chr10:94831600-94835400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:94831600-94835400	Flanking Active TSS	Liver	Liver
13	chr10:94831600-94835800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
14	chr10:94831800-94835000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr10:94831800-94836000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr10:94832400-94834000	Enhancers	Gastric	stomach
17	chr10:94832400-94835200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:94832400-94835400	Bivalent Enhancer	Placenta	Placenta
19	chr10:94832600-94834000	Bivalent Enhancer	Fetal Heart	heart
20	chr10:94832800-94834000	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:94832800-94834000	Bivalent/Poised TSS	HepG2	liver
22	chr10:94832800-94834200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr10:94832800-94834400	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
24	chr10:94832800-94834400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
25	chr10:94832800-94835000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr10:94832800-94835200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr10:94832800-94835200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr10:94832800-94835200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
29	chr10:94833000-94834000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
30	chr10:94833000-94834200	Bivalent/Poised TSS	Primary T cells from cord blood	blood
31	chr10:94833000-94834200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:94833000-94834200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
33	chr10:94833000-94834200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
34	chr10:94833000-94834400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
35	chr10:94833000-94834400	Active TSS	Aorta	Aorta
36	chr10:94833000-94835200	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:94833000-94835200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
38	chr10:94833000-94835200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr10:94833200-94834000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
40	chr10:94833200-94834000	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:94833200-94834000	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
42	chr10:94833200-94834000	Bivalent/Poised TSS	HSMM	muscle
43	chr10:94833200-94834200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr10:94833200-94834200	Flanking Active TSS	Primary B cells from cord blood	blood
45	chr10:94833200-94834200	Active TSS	Right Atrium	heart
46	chr10:94833200-94834400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
47	chr10:94833200-94834400	Active TSS	A549	lung
48	chr10:94833200-94834600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr10:94833200-94834800	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr10:94833200-94835000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell

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