Variant report

Variant	rs1339820
Chromosome Location	chr10:94818382-94818383
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94816400..94818446-chr10:95114404..95117181,2	K562	blood:
2	chr10:94747646..94749264-chr10:94816828..94819755,2	K562	blood:
3	chr10:94809589..94812648-chr10:94815329..94819605,4	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10509649	0.83[AMR][1000 genomes]
rs10748590	0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882124	0.92[GIH][hapmap];0.92[MEX][hapmap]
rs11187206	0.92[MEX][hapmap]
rs11187243	0.87[AMR][1000 genomes]
rs11187247	1.00[GIH][hapmap];0.84[MEX][hapmap];0.91[AMR][1000 genomes]
rs11187252	0.91[AMR][1000 genomes]
rs11187257	0.85[AMR][1000 genomes]
rs11187258	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11187259	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11187260	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187263	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11187264	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11187265	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1222605	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263200	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12354891	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12358168	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1238178	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12413378	0.83[AMR][1000 genomes]
rs12416051	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1475366	0.91[AMR][1000 genomes]
rs17108036	0.82[AMR][1000 genomes]
rs17108042	0.83[AMR][1000 genomes]
rs17108043	0.83[AMR][1000 genomes]
rs17108050	0.83[AMR][1000 genomes]
rs1750741	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2478233	0.88[AFR][1000 genomes]
rs2478238	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2486682	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2486683	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2486686	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2486687	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35630863	0.89[ASN][1000 genomes]
rs4581378	0.89[ASN][1000 genomes]
rs4917898	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4919044	0.83[AMR][1000 genomes]
rs4919592	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55661575	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55853605	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55856996	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58993699	0.89[ASN][1000 genomes]
rs59539045	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61568973	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61863079	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61863080	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61863087	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73317384	0.89[ASN][1000 genomes]
rs73319304	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319347	0.89[ASN][1000 genomes]
rs73319398	0.89[ASN][1000 genomes]
rs7895700	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918909	0.92[GIH][hapmap];0.92[MEX][hapmap]
rs835256	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835257	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835258	0.89[ASN][1000 genomes]
rs835260	0.89[ASN][1000 genomes]
rs835261	0.89[ASN][1000 genomes]
rs835262	0.89[ASN][1000 genomes]
rs835263	0.89[ASN][1000 genomes]
rs835265	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835269	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs835270	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835271	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835274	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835275	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835277	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835279	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs835280	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];0.85[TSI][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844341	0.89[ASN][1000 genomes]
rs860669	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9419761	0.89[ASN][1000 genomes]
rs9419763	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9419765	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9419766	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9420603	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9420607	0.89[ASN][1000 genomes]
rs9420608	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9420610	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802015	chr10:94811983-94839960	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv895899	chr10:94818382-94836435	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94785200-94819000	Weak transcription	Thymus	Thymus
3	chr10:94788000-94819000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:94788000-94819400	Weak transcription	Left Ventricle	heart
5	chr10:94792600-94819600	Weak transcription	Aorta	Aorta
6	chr10:94792600-94819800	Weak transcription	HSMMtube	muscle
7	chr10:94795800-94819600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:94800000-94818400	Weak transcription	Primary B cells from peripheral blood	blood
9	chr10:94801400-94818800	Weak transcription	Primary T cells from cord blood	blood
10	chr10:94801800-94820200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:94804000-94819800	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr10:94804200-94821000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:94806200-94821000	Weak transcription	Gastric	stomach
14	chr10:94807800-94819800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr10:94808000-94821000	Weak transcription	Pancreas	Pancrea
16	chr10:94809000-94819400	Weak transcription	Spleen	Spleen
17	chr10:94809800-94818600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:94811800-94825000	Weak transcription	HepG2	liver
19	chr10:94812000-94819200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr10:94816000-94819000	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr10:94816000-94819600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr10:94816200-94819800	Weak transcription	Placenta	Placenta
23	chr10:94816400-94819600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr10:94816600-94818800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:94816600-94819000	Weak transcription	Liver	Liver
26	chr10:94816600-94820000	Strong transcription	HUVEC	blood vessel
27	chr10:94816600-94821200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr10:94817000-94819000	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr10:94817200-94819400	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr10:94817200-94819600	Weak transcription	Lung	lung
31	chr10:94817600-94818800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr10:94817600-94819000	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr10:94817600-94819600	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr10:94817600-94821200	Strong transcription	Dnd41	blood
35	chr10:94817800-94818400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:94817800-94819000	Strong transcription	Adipose Nuclei	Adipose
37	chr10:94817800-94819000	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr10:94818000-94819200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
39	chr10:94818000-94822800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr10:94818200-94819400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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