Variant report

Variant	rs12413378
Chromosome Location	chr10:94759305-94759306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10509649	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10748590	0.83[AMR][1000 genomes]
rs11187225	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11187231	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187232	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187235	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187243	0.88[AMR][1000 genomes]
rs11187247	0.92[AMR][1000 genomes]
rs11187252	0.92[AMR][1000 genomes]
rs11187257	0.86[AMR][1000 genomes]
rs11187258	0.92[AMR][1000 genomes]
rs11187259	0.92[AMR][1000 genomes]
rs11187260	0.83[AMR][1000 genomes]
rs11187263	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs11187264	0.92[AMR][1000 genomes]
rs11187265	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs1222605	0.83[AMR][1000 genomes]
rs12263200	0.82[AMR][1000 genomes]
rs12354891	0.92[AMR][1000 genomes]
rs12357515	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12358168	0.83[AMR][1000 genomes]
rs1238178	0.83[AMR][1000 genomes]
rs12416051	0.85[AMR][1000 genomes]
rs1339820	0.83[AMR][1000 genomes]
rs1475366	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs17108036	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17108042	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17108043	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17108050	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1750741	0.83[AMR][1000 genomes]
rs2478238	0.83[AMR][1000 genomes]
rs2486682	0.83[AMR][1000 genomes]
rs2486683	0.83[AMR][1000 genomes]
rs2486686	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2486687	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4314975	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4917898	0.83[AMR][1000 genomes]
rs4919044	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4919592	0.92[AMR][1000 genomes]
rs55661575	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs55853605	0.92[AMR][1000 genomes]
rs55856996	0.83[AMR][1000 genomes]
rs56024810	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59539045	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61568973	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61863079	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61863080	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61863087	0.83[AMR][1000 genomes]
rs73319304	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7895700	0.85[AMR][1000 genomes]
rs7905234	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914449	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835256	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs835257	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs835265	0.85[AMR][1000 genomes]
rs835270	0.85[AMR][1000 genomes]
rs835271	0.85[AMR][1000 genomes]
rs835274	0.83[AMR][1000 genomes]
rs835275	0.83[AMR][1000 genomes]
rs835277	0.83[AMR][1000 genomes]
rs835280	0.83[AMR][1000 genomes]
rs860669	0.83[AMR][1000 genomes]
rs9419763	0.85[AMR][1000 genomes]
rs9419765	0.83[AMR][1000 genomes]
rs9419766	0.83[AMR][1000 genomes]
rs9420603	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9420608	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv467435	chr10:94716313-94779550	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv551943	chr10:94716313-94779550	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94712600-94787800	Weak transcription	Left Ventricle	heart
2	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:94730800-94773400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:94731600-94777200	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr10:94732600-94780800	Weak transcription	Psoas Muscle	Psoas
6	chr10:94737800-94760000	Weak transcription	Primary B cells from cord blood	blood
7	chr10:94741400-94760800	Weak transcription	HUVEC	blood vessel
8	chr10:94749000-94774000	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:94750000-94790200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr10:94750800-94774000	Weak transcription	Adipose Nuclei	Adipose
11	chr10:94750800-94794600	Weak transcription	Small Intestine	intestine
12	chr10:94751800-94769200	Weak transcription	K562	blood
13	chr10:94754000-94760000	Weak transcription	Primary T cells from cord blood	blood
14	chr10:94754000-94772600	Weak transcription	Pancreas	Pancrea
15	chr10:94754400-94765800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr10:94754400-94785000	Weak transcription	Dnd41	blood
17	chr10:94756200-94774000	Weak transcription	Primary B cells from peripheral blood	blood
18	chr10:94756800-94776200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr10:94757200-94761400	Weak transcription	Hela-S3	cervix
20	chr10:94757400-94784000	Weak transcription	Fetal Muscle Leg	muscle
21	chr10:94757400-94784400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr10:94757400-94786000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr10:94757600-94759800	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr10:94757800-94763400	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr10:94757800-94773800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:94757800-94776000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr10:94757800-94777200	Weak transcription	HSMM	muscle
28	chr10:94757800-94784000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr10:94758000-94761000	Weak transcription	HSMMtube	muscle
30	chr10:94758000-94774000	Weak transcription	Primary hematopoietic stem cells	blood
31	chr10:94758200-94766000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr10:94758200-94774000	Weak transcription	Liver	Liver
33	chr10:94758800-94759600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:94759200-94763800	Strong transcription	Primary neutrophils fromperipheralblood	blood

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