Variant report

Variant	rs11187232
Chromosome Location	chr10:94737477-94737478
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10509649	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs10882124	0.88[EUR][1000 genomes]
rs10882131	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11187206	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11187215	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11187221	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11187222	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11187225	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11187231	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187235	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187243	0.80[AMR][1000 genomes]
rs11187247	0.84[AMR][1000 genomes]
rs11187252	0.84[AMR][1000 genomes]
rs11187258	0.84[AMR][1000 genomes]
rs11187259	0.84[AMR][1000 genomes]
rs11187263	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs11187264	0.84[AMR][1000 genomes]
rs11187265	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12354891	0.84[AMR][1000 genomes]
rs12357515	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12413378	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416051	0.81[AMR][1000 genomes]
rs1475366	0.84[AMR][1000 genomes]
rs17108036	0.90[AMR][1000 genomes]
rs17108042	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs17108043	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs17108050	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs17378057	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2486686	0.81[AMR][1000 genomes]
rs2486687	0.81[AMR][1000 genomes]
rs4314975	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4919044	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4919592	0.84[AMR][1000 genomes]
rs4933758	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55661575	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs55853605	0.84[AMR][1000 genomes]
rs56024810	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56112656	0.91[EUR][1000 genomes]
rs59539045	0.81[AMR][1000 genomes]
rs61568973	0.81[AMR][1000 genomes]
rs61863079	0.81[AMR][1000 genomes]
rs61863080	0.81[AMR][1000 genomes]
rs73319304	0.81[AMR][1000 genomes]
rs7895700	0.81[AMR][1000 genomes]
rs7905234	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914449	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918909	0.91[EUR][1000 genomes]
rs835256	0.81[AMR][1000 genomes]
rs835257	0.81[AMR][1000 genomes]
rs835265	0.81[AMR][1000 genomes]
rs835270	0.81[AMR][1000 genomes]
rs835271	0.81[AMR][1000 genomes]
rs9419763	0.81[AMR][1000 genomes]
rs9420603	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv467435	chr10:94716313-94779550	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv551943	chr10:94716313-94779550	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
2	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
3	chr10:94662600-94748400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr10:94689200-94738000	Weak transcription	Fetal Thymus	thymus
5	chr10:94710400-94741400	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr10:94712600-94787800	Weak transcription	Left Ventricle	heart
7	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr10:94713400-94738600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr10:94720200-94739200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr10:94730800-94753400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:94730800-94773400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:94731600-94777200	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr10:94732200-94742400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr10:94732600-94780800	Weak transcription	Psoas Muscle	Psoas
15	chr10:94732800-94738800	Weak transcription	A549	lung
16	chr10:94732800-94740200	Weak transcription	Fetal Intestine Small	intestine
17	chr10:94732800-94742400	Weak transcription	Fetal Muscle Leg	muscle
18	chr10:94732800-94750400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr10:94733200-94749400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:94733400-94743600	Weak transcription	Primary T cells from cord blood	blood
21	chr10:94733600-94750400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr10:94734000-94750400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr10:94734200-94748800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr10:94734400-94739200	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr10:94734400-94739600	Weak transcription	Liver	Liver
26	chr10:94734400-94741600	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr10:94735000-94759200	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr10:94736000-94738200	Weak transcription	Lung	lung
29	chr10:94736000-94753600	Weak transcription	Gastric	stomach
30	chr10:94736400-94737600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:94736600-94737800	Strong transcription	HUVEC	blood vessel
32	chr10:94736800-94737600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:94736800-94748800	Weak transcription	K562	blood
34	chr10:94737000-94739800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr10:94737400-94737600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr10:94737400-94737800	Strong transcription	Primary B cells from cord blood	blood

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