Variant report

Variant	rs12357515
Chromosome Location	chr10:94725508-94725509
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94644446..94645158-chr10:94724939..94725631,2	MCF-7	breast:
2	chr10:94725088..94725800-chr10:94799198..94800112,2	MCF-7	breast:
3	chr10:94674029..94674852-chr10:94724715..94725565,2	MCF-7	breast:
4	chr10:94725153..94725681-chr10:95112155..95112815,2	K562	blood:
5	chr10:94717524..94719728-chr10:94723592..94725856,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10509649	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10882124	0.86[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10882131	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11187206	0.86[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11187215	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11187221	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11187222	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11187225	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11187231	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187232	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187235	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187247	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.92[MEX][hapmap];0.84[MKK][hapmap]
rs12413378	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339820	1.00[GIH][hapmap];0.92[MEX][hapmap]
rs17108042	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs17108043	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs17108050	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs17378057	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4314975	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4919044	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4933758	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56024810	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56112656	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7905234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918909	0.86[ASW][hapmap];0.85[CEU][hapmap];0.92[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs835280	1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv515937	chr10:94660133-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv467434	chr10:94668524-94725508	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv551940	chr10:94668524-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv467435	chr10:94716313-94779550	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv551943	chr10:94716313-94779550	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
2	chr10:94653400-94730200	Weak transcription	Fetal Brain Male	brain
3	chr10:94658000-94732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
5	chr10:94658600-94725800	Weak transcription	Lung	lung
6	chr10:94662600-94748400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr10:94667400-94733400	Weak transcription	Pancreas	Pancrea
8	chr10:94689200-94738000	Weak transcription	Fetal Thymus	thymus
9	chr10:94690000-94730000	Weak transcription	Placenta	Placenta
10	chr10:94699400-94728600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr10:94703000-94731800	Weak transcription	Spleen	Spleen
12	chr10:94704600-94731800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr10:94706600-94731600	Weak transcription	Hela-S3	cervix
14	chr10:94707400-94735400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr10:94708200-94732400	Weak transcription	Colon Smooth Muscle	Colon
16	chr10:94709000-94731800	Weak transcription	Duodenum Mucosa	Duodenum
17	chr10:94709000-94735400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr10:94710400-94741400	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr10:94711200-94730000	Weak transcription	K562	blood
20	chr10:94712600-94787800	Weak transcription	Left Ventricle	heart
21	chr10:94713000-94728800	Weak transcription	Primary B cells from peripheral blood	blood
22	chr10:94713200-94731600	Weak transcription	Fetal Intestine Small	intestine
23	chr10:94713200-94731800	Weak transcription	Psoas Muscle	Psoas
24	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr10:94713400-94730800	Weak transcription	Adipose Nuclei	Adipose
26	chr10:94713400-94731000	Weak transcription	Fetal Muscle Trunk	muscle
27	chr10:94713400-94732000	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr10:94713400-94738600	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr10:94714000-94731600	Weak transcription	Thymus	Thymus
30	chr10:94714200-94732200	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr10:94714800-94732000	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr10:94714800-94733200	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr10:94715000-94728800	Weak transcription	Fetal Muscle Leg	muscle
34	chr10:94715000-94730400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr10:94715000-94732400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr10:94715600-94734800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr10:94716800-94731200	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr10:94717400-94729800	Weak transcription	Dnd41	blood
39	chr10:94718200-94726600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr10:94718200-94729800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr10:94718400-94728800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr10:94718400-94733800	Weak transcription	Liver	Liver
43	chr10:94718600-94728800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr10:94719800-94731600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr10:94720200-94731200	Weak transcription	Primary T cells from cord blood	blood
46	chr10:94720200-94732000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr10:94720200-94739200	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr10:94721800-94729000	Weak transcription	Primary B cells from cord blood	blood
49	chr10:94722000-94728800	Weak transcription	Primary hematopoietic stem cells	blood
50	chr10:94722000-94732400	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links