Variant report

Variant	rs17108042
Chromosome Location	chr10:94770488-94770489
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94760975..94762817-chr10:94769070..94770709,3	K562	blood:
2	chr10:94764756..94767709-chr10:94768473..94770843,2	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10509649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748590	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs10882124	0.92[GIH][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap]
rs10882131	0.82[AFR][1000 genomes]
rs11187206	1.00[LWK][hapmap];0.92[MEX][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap]
rs11187221	0.82[AFR][1000 genomes]
rs11187225	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11187231	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs11187232	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs11187235	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs11187243	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11187247	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes]
rs11187252	0.92[AMR][1000 genomes]
rs11187257	0.86[AMR][1000 genomes]
rs11187258	0.92[AMR][1000 genomes]
rs11187259	0.92[AMR][1000 genomes]
rs11187260	0.83[AMR][1000 genomes]
rs11187263	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs11187264	0.92[AMR][1000 genomes]
rs11187265	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs1222605	0.83[AMR][1000 genomes]
rs12263200	0.82[AMR][1000 genomes]
rs12354891	0.92[AMR][1000 genomes]
rs12357515	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs12358168	0.83[AMR][1000 genomes]
rs1238178	0.83[AMR][1000 genomes]
rs12413378	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12416051	0.85[AMR][1000 genomes]
rs1339820	1.00[GIH][hapmap];0.84[MEX][hapmap];0.83[AMR][1000 genomes]
rs1475366	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17108036	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17108043	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108050	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17378057	0.82[AFR][1000 genomes]
rs1750741	0.83[AMR][1000 genomes]
rs2478238	0.83[AMR][1000 genomes]
rs2486682	0.83[AMR][1000 genomes]
rs2486683	0.83[AMR][1000 genomes]
rs2486686	0.85[AMR][1000 genomes]
rs2486687	0.85[AMR][1000 genomes]
rs4314975	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4917898	0.83[AMR][1000 genomes]
rs4919044	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4919592	0.92[AMR][1000 genomes]
rs4933758	0.82[AFR][1000 genomes]
rs55661575	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs55853605	0.92[AMR][1000 genomes]
rs55856996	0.83[AMR][1000 genomes]
rs56024810	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs59539045	0.85[AMR][1000 genomes]
rs61568973	0.85[AMR][1000 genomes]
rs61863079	0.85[AMR][1000 genomes]
rs61863080	0.85[AMR][1000 genomes]
rs61863087	0.83[AMR][1000 genomes]
rs73319304	0.85[AMR][1000 genomes]
rs7895700	0.85[AMR][1000 genomes]
rs7905234	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7914449	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7918909	0.92[GIH][hapmap];0.92[LWK][hapmap];0.92[MEX][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap]
rs835256	0.85[AMR][1000 genomes]
rs835257	0.85[AMR][1000 genomes]
rs835265	0.85[AMR][1000 genomes]
rs835270	0.85[AMR][1000 genomes]
rs835271	0.85[AMR][1000 genomes]
rs835274	0.83[AMR][1000 genomes]
rs835275	0.83[AMR][1000 genomes]
rs835277	0.83[AMR][1000 genomes]
rs835280	1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];0.83[AMR][1000 genomes]
rs860669	0.83[AMR][1000 genomes]
rs9419763	0.85[AMR][1000 genomes]
rs9419765	0.83[AMR][1000 genomes]
rs9419766	0.83[AMR][1000 genomes]
rs9420603	0.85[AMR][1000 genomes]
rs9420608	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv467435	chr10:94716313-94779550	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv551943	chr10:94716313-94779550	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94712600-94787800	Weak transcription	Left Ventricle	heart
2	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:94730800-94773400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:94731600-94777200	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr10:94732600-94780800	Weak transcription	Psoas Muscle	Psoas
6	chr10:94749000-94774000	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:94750000-94790200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr10:94750800-94774000	Weak transcription	Adipose Nuclei	Adipose
9	chr10:94750800-94794600	Weak transcription	Small Intestine	intestine
10	chr10:94754000-94772600	Weak transcription	Pancreas	Pancrea
11	chr10:94754400-94785000	Weak transcription	Dnd41	blood
12	chr10:94756200-94774000	Weak transcription	Primary B cells from peripheral blood	blood
13	chr10:94756800-94776200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr10:94757400-94784000	Weak transcription	Fetal Muscle Leg	muscle
15	chr10:94757400-94784400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr10:94757400-94786000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr10:94757800-94773800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:94757800-94776000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:94757800-94777200	Weak transcription	HSMM	muscle
20	chr10:94757800-94784000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr10:94758000-94774000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr10:94758200-94774000	Weak transcription	Liver	Liver
23	chr10:94761000-94774000	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr10:94762200-94791400	Weak transcription	Placenta	Placenta
25	chr10:94762400-94780600	Weak transcription	Primary B cells from cord blood	blood
26	chr10:94763200-94773400	Weak transcription	Primary T cells from cord blood	blood
27	chr10:94763400-94774000	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr10:94763800-94778800	Weak transcription	HUVEC	blood vessel
29	chr10:94764200-94775800	Weak transcription	Fetal Intestine Small	intestine
30	chr10:94764800-94778200	Weak transcription	A549	lung
31	chr10:94766200-94790000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr10:94766600-94782600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr10:94766800-94773400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr10:94767800-94773800	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr10:94768600-94774000	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr10:94768800-94786600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr10:94770200-94788600	Weak transcription	K562	blood

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