Variant report

Variant	rs10748590
Chromosome Location	chr10:94812426-94812427
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94809589..94812648-chr10:94815329..94819605,4	K562	blood:
2	chr10:94811398..94813205-chr10:94819330..94822159,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187553	Chromatin interaction
ENSG00000226425	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10509649	0.83[AMR][1000 genomes]
rs11187243	0.87[AMR][1000 genomes]
rs11187247	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11187252	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11187257	0.85[AMR][1000 genomes]
rs11187258	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11187259	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11187260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187263	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11187264	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11187265	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1222605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263200	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12354891	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12358168	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1238178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12413378	0.83[AMR][1000 genomes]
rs12416051	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339820	0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1475366	0.91[AMR][1000 genomes]
rs17108036	0.82[AMR][1000 genomes]
rs17108042	0.83[AMR][1000 genomes]
rs17108043	0.83[AMR][1000 genomes]
rs17108050	0.83[AMR][1000 genomes]
rs1750741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2478233	0.89[AFR][1000 genomes]
rs2478238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2486682	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2486683	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2486686	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2486687	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35630863	0.89[ASN][1000 genomes]
rs4581378	0.89[ASN][1000 genomes]
rs4917898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4919044	0.83[AMR][1000 genomes]
rs4919592	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55661575	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55853605	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55856996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58993699	0.89[ASN][1000 genomes]
rs59539045	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61568973	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61863079	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61863080	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61863087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73317384	0.89[ASN][1000 genomes]
rs73319304	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319347	0.89[ASN][1000 genomes]
rs73319398	0.89[ASN][1000 genomes]
rs7895700	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835256	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835257	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835258	0.89[ASN][1000 genomes]
rs835260	0.89[ASN][1000 genomes]
rs835261	0.89[ASN][1000 genomes]
rs835262	0.89[ASN][1000 genomes]
rs835263	0.89[ASN][1000 genomes]
rs835265	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835269	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs835270	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835271	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835274	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835275	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835279	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs835280	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844341	0.89[ASN][1000 genomes]
rs860669	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9419761	0.89[ASN][1000 genomes]
rs9419763	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9419765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9419766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9420603	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9420607	0.89[ASN][1000 genomes]
rs9420608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9420610	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802015	chr10:94811983-94839960	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94775400-94812800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr10:94785200-94819000	Weak transcription	Thymus	Thymus
4	chr10:94787200-94817600	Weak transcription	Dnd41	blood
5	chr10:94787800-94814000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr10:94788000-94819000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:94788000-94819400	Weak transcription	Left Ventricle	heart
8	chr10:94788400-94815800	Weak transcription	Fetal Muscle Leg	muscle
9	chr10:94790800-94813800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr10:94792600-94819600	Weak transcription	Aorta	Aorta
11	chr10:94792600-94819800	Weak transcription	HSMMtube	muscle
12	chr10:94795600-94817800	Weak transcription	Fetal Intestine Small	intestine
13	chr10:94795800-94819600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr10:94799800-94817000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr10:94800000-94818400	Weak transcription	Primary B cells from peripheral blood	blood
16	chr10:94800800-94817600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr10:94800800-94818000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr10:94801000-94816600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:94801400-94818800	Weak transcription	Primary T cells from cord blood	blood
20	chr10:94801800-94820200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr10:94803600-94817600	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr10:94803600-94818000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:94804000-94819800	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr10:94804200-94821000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr10:94804600-94817800	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr10:94806200-94815800	Weak transcription	Primary B cells from cord blood	blood
27	chr10:94806200-94816600	Weak transcription	HUVEC	blood vessel
28	chr10:94806200-94821000	Weak transcription	Gastric	stomach
29	chr10:94807800-94819800	Weak transcription	Duodenum Mucosa	Duodenum
30	chr10:94808000-94821000	Weak transcription	Pancreas	Pancrea
31	chr10:94808200-94815600	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr10:94809000-94813800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:94809000-94819400	Weak transcription	Spleen	Spleen
34	chr10:94809600-94817800	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr10:94809800-94818600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr10:94811000-94814600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr10:94811200-94815600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr10:94811800-94814400	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr10:94811800-94815200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr10:94811800-94825000	Weak transcription	HepG2	liver
41	chr10:94812000-94814400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr10:94812000-94819200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr10:94812200-94815200	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr10:94812200-94815400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr10:94812400-94813600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr10:94812400-94817800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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