Variant report

Variant	rs835262
Chromosome Location	chr10:94785223-94785224
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94783453..94786441-chr10:94789329..94791251,2	K562	blood:
2	chr10:94753932..94755688-chr10:94783121..94786065,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10748590	0.89[ASN][1000 genomes]
rs11187260	0.89[ASN][1000 genomes]
rs1222605	0.89[ASN][1000 genomes]
rs12263200	0.89[ASN][1000 genomes]
rs12358168	0.89[ASN][1000 genomes]
rs1238178	0.89[ASN][1000 genomes]
rs12416051	0.89[ASN][1000 genomes]
rs1339820	0.89[ASN][1000 genomes]
rs1750741	0.89[ASN][1000 genomes]
rs2478238	0.89[ASN][1000 genomes]
rs2486682	0.89[ASN][1000 genomes]
rs2486683	0.89[ASN][1000 genomes]
rs2486686	0.89[ASN][1000 genomes]
rs2486687	0.89[ASN][1000 genomes]
rs35630863	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4405247	0.89[ASN][1000 genomes]
rs4581378	0.86[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4917898	0.89[ASN][1000 genomes]
rs55856996	0.89[ASN][1000 genomes]
rs58993699	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59539045	0.89[ASN][1000 genomes]
rs61863079	0.89[ASN][1000 genomes]
rs61863080	0.89[ASN][1000 genomes]
rs61863087	0.89[ASN][1000 genomes]
rs73317384	1.00[ASN][1000 genomes]
rs73319304	0.89[ASN][1000 genomes]
rs73319347	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319398	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895700	0.89[ASN][1000 genomes]
rs835256	0.89[ASN][1000 genomes]
rs835257	0.89[ASN][1000 genomes]
rs835258	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835260	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835265	0.89[ASN][1000 genomes]
rs835269	0.89[ASN][1000 genomes]
rs835270	0.89[ASN][1000 genomes]
rs835271	0.89[ASN][1000 genomes]
rs835274	0.89[ASN][1000 genomes]
rs835275	0.89[ASN][1000 genomes]
rs835277	0.89[ASN][1000 genomes]
rs835280	0.89[ASN][1000 genomes]
rs844341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs860669	0.89[ASN][1000 genomes]
rs9419761	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9419763	0.89[ASN][1000 genomes]
rs9419765	0.89[ASN][1000 genomes]
rs9419766	0.89[ASN][1000 genomes]
rs9420603	0.89[ASN][1000 genomes]
rs9420607	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9420608	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94712600-94787800	Weak transcription	Left Ventricle	heart
2	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:94750000-94790200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr10:94750800-94794600	Weak transcription	Small Intestine	intestine
5	chr10:94757400-94786000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:94762200-94791400	Weak transcription	Placenta	Placenta
7	chr10:94766200-94790000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr10:94768800-94786600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr10:94770200-94788600	Weak transcription	K562	blood
10	chr10:94771400-94788000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr10:94772600-94791800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr10:94772800-94785800	Weak transcription	Pancreas	Pancrea
13	chr10:94773000-94785600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr10:94773400-94800000	Weak transcription	Lung	lung
15	chr10:94774400-94786400	Weak transcription	Colon Smooth Muscle	Colon
16	chr10:94774400-94787600	Weak transcription	Adipose Nuclei	Adipose
17	chr10:94775200-94791400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr10:94775400-94786400	Weak transcription	Fetal Intestine Large	intestine
19	chr10:94775400-94812800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:94776200-94787600	Weak transcription	Fetal Intestine Small	intestine
21	chr10:94777400-94786400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr10:94777400-94788800	Weak transcription	HSMMtube	muscle
23	chr10:94778400-94785800	Weak transcription	A549	lung
24	chr10:94779800-94786800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr10:94779800-94789800	Weak transcription	Ovary	ovary
26	chr10:94780600-94801400	Weak transcription	Brain Anterior Caudate	brain
27	chr10:94781400-94785600	Weak transcription	Primary B cells from cord blood	blood
28	chr10:94781400-94785600	Weak transcription	Primary hematopoietic stem cells	blood
29	chr10:94781400-94807600	Weak transcription	Psoas Muscle	Psoas
30	chr10:94782800-94787400	Strong transcription	Primary T cells from cord blood	blood
31	chr10:94782800-94788400	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr10:94783000-94790000	Weak transcription	Rectal Smooth Muscle	rectum
33	chr10:94783200-94786600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:94783200-94789000	Weak transcription	Fetal Thymus	thymus
35	chr10:94783200-94793400	Weak transcription	Fetal Heart	heart
36	chr10:94783200-94794000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr10:94783400-94786200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr10:94783400-94786800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr10:94783400-94787600	Weak transcription	Brain Germinal Matrix	brain
40	chr10:94783400-94791800	Weak transcription	Liver	Liver
41	chr10:94783400-94802800	Weak transcription	Stomach Smooth Muscle	stomach
42	chr10:94783600-94787800	Strong transcription	Primary neutrophils fromperipheralblood	blood
43	chr10:94783800-94788200	Strong transcription	HUVEC	blood vessel
44	chr10:94784000-94786200	Strong transcription	Primary B cells from peripheral blood	blood
45	chr10:94784000-94787800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr10:94784200-94785800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr10:94784200-94788200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr10:94784400-94786400	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr10:94784400-94786600	Weak transcription	Fetal Muscle Leg	muscle
50	chr10:94785000-94786600	Strong transcription	Dnd41	blood

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