Variant report

Variant	rs835270
Chromosome Location	chr10:94791504-94791505
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10509649	0.85[AMR][1000 genomes]
rs10748590	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187231	0.81[AMR][1000 genomes]
rs11187232	0.81[AMR][1000 genomes]
rs11187235	0.81[AMR][1000 genomes]
rs11187243	0.89[AMR][1000 genomes]
rs11187247	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11187252	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11187257	0.87[AMR][1000 genomes]
rs11187258	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11187259	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11187260	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187263	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11187264	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11187265	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1222605	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263200	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12354891	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12358168	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1238178	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12413378	0.85[AMR][1000 genomes]
rs12416051	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339820	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1475366	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17108036	0.83[AMR][1000 genomes]
rs17108042	0.85[AMR][1000 genomes]
rs17108043	0.85[AMR][1000 genomes]
rs17108050	0.85[AMR][1000 genomes]
rs1750741	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2478233	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2478238	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2486682	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2486683	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2486686	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2486687	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35630863	0.89[ASN][1000 genomes]
rs4581378	0.89[ASN][1000 genomes]
rs4917898	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4919044	0.85[AMR][1000 genomes]
rs4919592	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs55661575	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs55853605	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs55856996	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56024810	0.81[AMR][1000 genomes]
rs58993699	0.89[ASN][1000 genomes]
rs59539045	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61568973	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61863079	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61863080	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61863087	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73317384	0.89[ASN][1000 genomes]
rs73319304	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319347	0.89[ASN][1000 genomes]
rs73319398	0.89[ASN][1000 genomes]
rs7895700	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835256	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835257	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835258	0.89[ASN][1000 genomes]
rs835260	0.89[ASN][1000 genomes]
rs835261	0.89[ASN][1000 genomes]
rs835262	0.89[ASN][1000 genomes]
rs835263	0.89[ASN][1000 genomes]
rs835265	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835269	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835271	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835274	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835275	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835277	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835279	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs835280	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844341	0.89[ASN][1000 genomes]
rs860669	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9419761	0.89[ASN][1000 genomes]
rs9419763	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9419765	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9419766	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9420603	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9420607	0.89[ASN][1000 genomes]
rs9420608	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9420610	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94750800-94794600	Weak transcription	Small Intestine	intestine
3	chr10:94772600-94791800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:94773400-94800000	Weak transcription	Lung	lung
5	chr10:94775400-94812800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:94780600-94801400	Weak transcription	Brain Anterior Caudate	brain
7	chr10:94781400-94807600	Weak transcription	Psoas Muscle	Psoas
8	chr10:94783200-94793400	Weak transcription	Fetal Heart	heart
9	chr10:94783200-94794000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:94783400-94791800	Weak transcription	Liver	Liver
11	chr10:94783400-94802800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr10:94785200-94819000	Weak transcription	Thymus	Thymus
13	chr10:94786200-94793200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:94786200-94799200	Weak transcription	Primary B cells from peripheral blood	blood
15	chr10:94786400-94792000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr10:94786400-94809200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr10:94787000-94792400	Weak transcription	Fetal Intestine Large	intestine
18	chr10:94787200-94817600	Weak transcription	Dnd41	blood
19	chr10:94787400-94799400	Weak transcription	Primary T cells from cord blood	blood
20	chr10:94787600-94799400	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr10:94787800-94792600	Weak transcription	Brain Germinal Matrix	brain
22	chr10:94787800-94793000	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr10:94787800-94799200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr10:94787800-94802000	Weak transcription	Primary B cells from cord blood	blood
25	chr10:94787800-94814000	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr10:94788000-94792600	Weak transcription	Fetal Intestine Small	intestine
27	chr10:94788000-94793000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:94788000-94799400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr10:94788000-94819000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr10:94788000-94819400	Weak transcription	Left Ventricle	heart
31	chr10:94788200-94792000	Weak transcription	Fetal Muscle Trunk	muscle
32	chr10:94788200-94799200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:94788400-94803400	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr10:94788400-94811000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr10:94788400-94815800	Weak transcription	Fetal Muscle Leg	muscle
36	chr10:94788600-94792600	Enhancers	HSMM	muscle
37	chr10:94788800-94799200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr10:94789600-94792600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr10:94790000-94792800	Enhancers	NHLF	lung
40	chr10:94790000-94793200	Enhancers	HepG2	liver
41	chr10:94790200-94791800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr10:94790200-94797600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr10:94790400-94792600	Weak transcription	HUVEC	blood vessel
44	chr10:94790400-94793600	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr10:94790600-94792600	Enhancers	HSMMtube	muscle
46	chr10:94790800-94799200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr10:94790800-94813800	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr10:94791000-94792000	Weak transcription	Ovary	ovary
49	chr10:94791000-94792000	Weak transcription	Rectal Smooth Muscle	rectum
50	chr10:94791000-94792000	Weak transcription	A549	lung

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