Variant report

Variant	rs55853605
Chromosome Location	chr10:94825097-94825098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SUZ12	chr10:94824892-94829163	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:94820079..94822680-chr10:94824918..94827506,3	K562	blood:
2	chr10:94822689..94825636-chr10:94825703..94828168,2	K562	blood:
3	chr10:94815612..94818000-chr10:94823407..94825360,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226425	TF binding region
ENSG00000187553	Chromatin interaction
ENSG00000226425	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10509649	0.92[AMR][1000 genomes]
rs10748590	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11187231	0.84[AMR][1000 genomes]
rs11187232	0.84[AMR][1000 genomes]
rs11187235	0.84[AMR][1000 genomes]
rs11187243	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187247	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187252	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187257	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11187258	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187259	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187260	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11187263	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187265	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1222605	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12263200	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12354891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12358168	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1238178	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12412418	1.00[ASN][1000 genomes]
rs12413378	0.92[AMR][1000 genomes]
rs12416051	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1339820	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1409384	1.00[ASN][1000 genomes]
rs1475366	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108036	0.90[AMR][1000 genomes]
rs17108042	0.92[AMR][1000 genomes]
rs17108043	0.92[AMR][1000 genomes]
rs17108050	0.92[AMR][1000 genomes]
rs1750741	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2478238	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2486682	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2486683	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2486686	0.92[AMR][1000 genomes]
rs2486687	0.92[AMR][1000 genomes]
rs4917898	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4919044	0.92[AMR][1000 genomes]
rs4919592	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55661575	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55856996	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56024810	0.84[AMR][1000 genomes]
rs59539045	0.92[AMR][1000 genomes]
rs61568973	0.92[AMR][1000 genomes]
rs61863079	0.92[AMR][1000 genomes]
rs61863080	0.92[AMR][1000 genomes]
rs61863087	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73319304	0.92[AMR][1000 genomes]
rs7895700	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs835256	0.92[AMR][1000 genomes]
rs835257	0.92[AMR][1000 genomes]
rs835265	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs835269	0.86[AMR][1000 genomes]
rs835270	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs835271	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs835274	0.91[AMR][1000 genomes]
rs835275	0.91[AMR][1000 genomes]
rs835277	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs835279	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs835280	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs860669	0.91[AMR][1000 genomes]
rs9419763	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9419765	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9419766	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9420603	0.92[AMR][1000 genomes]
rs9420608	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802015	chr10:94811983-94839960	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv895899	chr10:94818382-94836435	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94819800-94827800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr10:94822000-94826800	Weak transcription	Dnd41	blood
3	chr10:94822400-94826400	Weak transcription	HUVEC	blood vessel
4	chr10:94822400-94827200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:94822800-94825400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr10:94823000-94828200	Weak transcription	Pancreas	Pancrea
7	chr10:94823000-94828400	Weak transcription	Gastric	stomach
8	chr10:94823000-94829600	Weak transcription	K562	blood
9	chr10:94823600-94825400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:94824000-94825200	ZNF genes & repeats	Spleen	Spleen
11	chr10:94824000-94828200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:94824200-94825200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
13	chr10:94824600-94825200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
14	chr10:94824600-94825200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:94825000-94825200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
16	chr10:94825000-94825400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
17	chr10:94825000-94825400	Enhancers	HepG2	liver
18	chr10:94825000-94825600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:94825000-94825800	Bivalent Enhancer	Fetal Muscle Leg	muscle

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