Variant report

Variant	rs11187252
Chromosome Location	chr10:94796166-94796167
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94795209..94797175-chr10:94807636..94809235,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10509649	0.92[AMR][1000 genomes]
rs10748590	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11187231	0.84[AMR][1000 genomes]
rs11187232	0.84[AMR][1000 genomes]
rs11187235	0.84[AMR][1000 genomes]
rs11187243	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187257	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11187258	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187260	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11187263	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187264	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187265	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1222605	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12263200	0.89[AMR][1000 genomes]
rs12354891	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12358168	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1238178	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12412418	1.00[ASN][1000 genomes]
rs12413378	0.92[AMR][1000 genomes]
rs12416051	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1339820	0.91[AMR][1000 genomes]
rs1409384	1.00[ASN][1000 genomes]
rs1475366	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108036	0.90[AMR][1000 genomes]
rs17108042	0.92[AMR][1000 genomes]
rs17108043	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs17108050	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs1750741	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2478238	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2486682	0.91[AMR][1000 genomes]
rs2486683	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2486686	0.92[AMR][1000 genomes]
rs2486687	0.92[AMR][1000 genomes]
rs4917898	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4919044	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4919592	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55661575	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55853605	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55856996	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56024810	0.84[AMR][1000 genomes]
rs59539045	0.92[AMR][1000 genomes]
rs61568973	0.92[AMR][1000 genomes]
rs61863079	0.92[AMR][1000 genomes]
rs61863080	0.92[AMR][1000 genomes]
rs61863087	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73319304	0.92[AMR][1000 genomes]
rs7895700	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs835256	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs835257	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs835265	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs835269	0.86[AMR][1000 genomes]
rs835270	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs835271	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs835274	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs835275	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs835277	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs835279	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs835280	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs860669	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9419763	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9419765	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9419766	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9420603	0.92[AMR][1000 genomes]
rs9420608	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv7493	chr10:94794288-94802037	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94773400-94800000	Weak transcription	Lung	lung
3	chr10:94775400-94812800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr10:94780600-94801400	Weak transcription	Brain Anterior Caudate	brain
5	chr10:94781400-94807600	Weak transcription	Psoas Muscle	Psoas
6	chr10:94783400-94802800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:94785200-94819000	Weak transcription	Thymus	Thymus
8	chr10:94786200-94799200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr10:94786400-94809200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr10:94787200-94817600	Weak transcription	Dnd41	blood
11	chr10:94787400-94799400	Weak transcription	Primary T cells from cord blood	blood
12	chr10:94787600-94799400	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr10:94787800-94799200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr10:94787800-94802000	Weak transcription	Primary B cells from cord blood	blood
15	chr10:94787800-94814000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr10:94788000-94799400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr10:94788000-94819000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr10:94788000-94819400	Weak transcription	Left Ventricle	heart
19	chr10:94788200-94799200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:94788400-94803400	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr10:94788400-94811000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr10:94788400-94815800	Weak transcription	Fetal Muscle Leg	muscle
23	chr10:94788800-94799200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr10:94790200-94797600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr10:94790800-94799200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr10:94790800-94813800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr10:94791000-94799200	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr10:94791200-94798600	Weak transcription	Osteobl	bone
29	chr10:94792600-94819600	Weak transcription	Aorta	Aorta
30	chr10:94792600-94819800	Weak transcription	HSMMtube	muscle
31	chr10:94793000-94799000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr10:94793000-94799000	Weak transcription	NHDF-Ad	bronchial
33	chr10:94793000-94801600	Weak transcription	HUVEC	blood vessel
34	chr10:94793200-94811200	Weak transcription	HepG2	liver
35	chr10:94793400-94799200	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr10:94793600-94798800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr10:94794200-94796600	Weak transcription	Stomach Mucosa	stomach
38	chr10:94794600-94799000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr10:94794800-94798600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:94795000-94803200	Weak transcription	A549	lung
41	chr10:94795000-94810200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr10:94795600-94817800	Weak transcription	Fetal Intestine Small	intestine
43	chr10:94795800-94819600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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