Variant report

Variant	rs10882131
Chromosome Location	chr10:94711319-94711320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94711041..94712719-chr10:94712728..94715075,2	K562	blood:
2	chr10:94710458..94712008-chr10:94713813..94715571,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10509649	0.82[AFR][1000 genomes]
rs10882124	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187206	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187215	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187222	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187225	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11187231	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11187232	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11187235	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11187247	1.00[CHD][hapmap];0.92[GIH][hapmap];0.92[LWK][hapmap];0.92[MEX][hapmap];0.84[MKK][hapmap]
rs12357515	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1339820	0.92[GIH][hapmap];0.92[MEX][hapmap]
rs1538648	0.90[JPT][hapmap]
rs17108042	0.82[AFR][1000 genomes]
rs17108043	0.84[AFR][1000 genomes]
rs17108050	0.84[AFR][1000 genomes]
rs17378057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4314975	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4919044	0.84[AFR][1000 genomes]
rs4933758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56024810	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56112656	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905234	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7914449	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7918909	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835280	0.92[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv515937	chr10:94660133-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv467434	chr10:94668524-94725508	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv551940	chr10:94668524-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs10882131	MYOF	cis	cerebellum	SCAN
rs10882131	HELLS	cis	cerebellum	SCAN
rs10882131	IFIT1	cis	parietal	SCAN
rs10882131	FLJ37201	cis	cerebellum	SCAN
rs10882131	PCGF5	cis	cerebellum	SCAN
rs10882131	SLC16A12	cis	cerebellum	SCAN

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94652400-94717400	Weak transcription	Esophagus	oesophagus
2	chr10:94652600-94712400	Weak transcription	Brain Angular Gyrus	brain
3	chr10:94652600-94718000	Weak transcription	Ovary	ovary
4	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
5	chr10:94653200-94725200	Weak transcription	Fetal Lung	lung
6	chr10:94653400-94730200	Weak transcription	Fetal Brain Male	brain
7	chr10:94654600-94714600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:94658000-94732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
10	chr10:94658600-94725800	Weak transcription	Lung	lung
11	chr10:94662600-94748400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr10:94664600-94714600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr10:94667400-94733400	Weak transcription	Pancreas	Pancrea
14	chr10:94672000-94716000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:94674800-94724600	Weak transcription	HSMM	muscle
16	chr10:94680600-94712800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr10:94681000-94717000	Weak transcription	Brain Anterior Caudate	brain
18	chr10:94683400-94724400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:94686600-94719600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr10:94687200-94718200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr10:94687400-94724200	Weak transcription	NHLF	lung
22	chr10:94687600-94713200	Weak transcription	Brain Substantia Nigra	brain
23	chr10:94689200-94738000	Weak transcription	Fetal Thymus	thymus
24	chr10:94689800-94714800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr10:94689800-94724600	Weak transcription	A549	lung
26	chr10:94690000-94717600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr10:94690000-94730000	Weak transcription	Placenta	Placenta
28	chr10:94692200-94717800	Weak transcription	Brain Germinal Matrix	brain
29	chr10:94692800-94721800	Strong transcription	HUVEC	blood vessel
30	chr10:94692800-94724400	Weak transcription	Small Intestine	intestine
31	chr10:94694400-94714600	Weak transcription	HepG2	liver
32	chr10:94696800-94712200	Weak transcription	Fetal Muscle Leg	muscle
33	chr10:94699000-94717400	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr10:94699200-94721600	Weak transcription	Fetal Intestine Large	intestine
35	chr10:94699400-94728600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr10:94699800-94712800	Weak transcription	Fetal Intestine Small	intestine
37	chr10:94699800-94714600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr10:94699800-94722800	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr10:94700000-94723000	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr10:94700400-94722800	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr10:94701200-94715800	Weak transcription	Brain Hippocampus Middle	brain
42	chr10:94701400-94720600	Weak transcription	Fetal Kidney	kidney
43	chr10:94701800-94712800	Weak transcription	Fetal Stomach	stomach
44	chr10:94703000-94731800	Weak transcription	Spleen	Spleen
45	chr10:94704000-94711600	Weak transcription	Fetal Muscle Trunk	muscle
46	chr10:94704000-94718400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr10:94704400-94717800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr10:94704600-94731800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr10:94705600-94712400	Weak transcription	Fetal Brain Female	brain
50	chr10:94705600-94716400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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