Variant report

Variant	rs4314975
Chromosome Location	chr10:94726966-94726967
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10509649	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10882124	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10882131	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11187206	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11187215	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11187221	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11187222	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11187225	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11187231	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187232	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187235	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12357515	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12413378	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108036	0.82[AMR][1000 genomes]
rs17108042	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17108043	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17108050	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17378057	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4919044	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4933758	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56024810	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56112656	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7905234	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914449	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918909	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv467435	chr10:94716313-94779550	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv551943	chr10:94716313-94779550	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
2	chr10:94653400-94730200	Weak transcription	Fetal Brain Male	brain
3	chr10:94658000-94732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
5	chr10:94662600-94748400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr10:94667400-94733400	Weak transcription	Pancreas	Pancrea
7	chr10:94689200-94738000	Weak transcription	Fetal Thymus	thymus
8	chr10:94690000-94730000	Weak transcription	Placenta	Placenta
9	chr10:94699400-94728600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:94703000-94731800	Weak transcription	Spleen	Spleen
11	chr10:94704600-94731800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr10:94706600-94731600	Weak transcription	Hela-S3	cervix
13	chr10:94707400-94735400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr10:94708200-94732400	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:94709000-94731800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr10:94709000-94735400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr10:94710400-94741400	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr10:94711200-94730000	Weak transcription	K562	blood
19	chr10:94712600-94787800	Weak transcription	Left Ventricle	heart
20	chr10:94713000-94728800	Weak transcription	Primary B cells from peripheral blood	blood
21	chr10:94713200-94731600	Weak transcription	Fetal Intestine Small	intestine
22	chr10:94713200-94731800	Weak transcription	Psoas Muscle	Psoas
23	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr10:94713400-94730800	Weak transcription	Adipose Nuclei	Adipose
25	chr10:94713400-94731000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr10:94713400-94732000	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr10:94713400-94738600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr10:94714000-94731600	Weak transcription	Thymus	Thymus
29	chr10:94714200-94732200	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr10:94714800-94732000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr10:94714800-94733200	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr10:94715000-94728800	Weak transcription	Fetal Muscle Leg	muscle
33	chr10:94715000-94730400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr10:94715000-94732400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr10:94715600-94734800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr10:94716800-94731200	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr10:94717400-94729800	Weak transcription	Dnd41	blood
38	chr10:94718200-94729800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr10:94718400-94728800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr10:94718400-94733800	Weak transcription	Liver	Liver
41	chr10:94718600-94728800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr10:94719800-94731600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr10:94720200-94731200	Weak transcription	Primary T cells from cord blood	blood
44	chr10:94720200-94732000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr10:94720200-94739200	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr10:94721800-94729000	Weak transcription	Primary B cells from cord blood	blood
47	chr10:94722000-94728800	Weak transcription	Primary hematopoietic stem cells	blood
48	chr10:94722000-94732400	Weak transcription	Fetal Heart	heart
49	chr10:94722800-94729800	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr10:94722800-94733400	Weak transcription	Primary monocytes fromperipheralblood	blood

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