Variant report

Variant	rs7914449
Chromosome Location	chr10:94723370-94723371
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94723359..94725094-chr10:94732291..94733816,2	K562	blood:
2	chr10:94723115..94725213-chr10:94730158..94733816,3	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10509649	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10882124	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10882131	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11187206	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11187215	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11187221	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11187222	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11187225	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11187231	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187232	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187235	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12357515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12413378	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108042	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs17108043	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs17108050	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs17378057	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4314975	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4919044	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4933758	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56024810	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56112656	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7905234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918909	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv515937	chr10:94660133-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv467434	chr10:94668524-94725508	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv551940	chr10:94668524-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv467435	chr10:94716313-94779550	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv551943	chr10:94716313-94779550	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
2	chr10:94653200-94725200	Weak transcription	Fetal Lung	lung
3	chr10:94653400-94730200	Weak transcription	Fetal Brain Male	brain
4	chr10:94658000-94732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
6	chr10:94658600-94725800	Weak transcription	Lung	lung
7	chr10:94662600-94748400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:94667400-94733400	Weak transcription	Pancreas	Pancrea
9	chr10:94674800-94724600	Weak transcription	HSMM	muscle
10	chr10:94683400-94724400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:94687400-94724200	Weak transcription	NHLF	lung
12	chr10:94689200-94738000	Weak transcription	Fetal Thymus	thymus
13	chr10:94689800-94724600	Weak transcription	A549	lung
14	chr10:94690000-94730000	Weak transcription	Placenta	Placenta
15	chr10:94692800-94724400	Weak transcription	Small Intestine	intestine
16	chr10:94699400-94728600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:94703000-94731800	Weak transcription	Spleen	Spleen
18	chr10:94704600-94731800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr10:94706600-94731600	Weak transcription	Hela-S3	cervix
20	chr10:94707400-94735400	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr10:94708200-94732400	Weak transcription	Colon Smooth Muscle	Colon
22	chr10:94709000-94731800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr10:94709000-94735400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr10:94710400-94741400	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr10:94711200-94730000	Weak transcription	K562	blood
26	chr10:94712600-94787800	Weak transcription	Left Ventricle	heart
27	chr10:94713000-94728800	Weak transcription	Primary B cells from peripheral blood	blood
28	chr10:94713200-94731600	Weak transcription	Fetal Intestine Small	intestine
29	chr10:94713200-94731800	Weak transcription	Psoas Muscle	Psoas
30	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr10:94713400-94723800	Weak transcription	Brain Angular Gyrus	brain
32	chr10:94713400-94730800	Weak transcription	Adipose Nuclei	Adipose
33	chr10:94713400-94731000	Weak transcription	Fetal Muscle Trunk	muscle
34	chr10:94713400-94732000	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr10:94713400-94738600	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr10:94714000-94731600	Weak transcription	Thymus	Thymus
37	chr10:94714200-94732200	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr10:94714800-94732000	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr10:94714800-94733200	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr10:94715000-94728800	Weak transcription	Fetal Muscle Leg	muscle
41	chr10:94715000-94730400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr10:94715000-94732400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr10:94715600-94734800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr10:94716800-94731200	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr10:94717400-94729800	Weak transcription	Dnd41	blood
46	chr10:94718200-94726600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr10:94718200-94729800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr10:94718400-94725200	Weak transcription	Ovary	ovary
49	chr10:94718400-94728800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr10:94718400-94733800	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links