Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11156157	0.93[YRI][hapmap]
rs11962789	0.93[YRI][hapmap]
rs1555775	0.93[YRI][hapmap]
rs1965603	0.93[YRI][hapmap]
rs2518267	0.93[YRI][hapmap]
rs2518268	0.93[YRI][hapmap]
rs2764224	0.93[YRI][hapmap]
rs2764225	1.00[YRI][hapmap]
rs2791817	0.92[YRI][hapmap]
rs2791821	0.92[YRI][hapmap]
rs2852573	0.93[YRI][hapmap]
rs4120910	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs4839803	0.93[YRI][hapmap]
rs4839804	0.93[YRI][hapmap]
rs4840197	0.92[YRI][hapmap]
rs4840198	0.93[YRI][hapmap]
rs4840199	0.93[YRI][hapmap]
rs4840200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6570996	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9322613	0.93[YRI][hapmap]
rs9377308	1.00[YRI][hapmap]
rs9377314	0.93[YRI][hapmap]
rs9377318	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap]
rs9386294	0.93[YRI][hapmap]
rs9390788	0.93[YRI][hapmap]
rs9404145	0.93[YRI][hapmap]
rs9404152	0.92[YRI][hapmap]
rs9404153	1.00[YRI][hapmap]
rs9485549	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs9485553	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9498713	0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830743	chr6:102284082-102459192	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv463994	chr6:102303080-102346746	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv604318	chr6:102303080-102346746	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv604319	chr6:102307069-102355867	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv604320	chr6:102310726-102350747	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv886465	chr6:102318339-102466397	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102326200-102327000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:102326600-102327000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr6:102326600-102327000	Enhancers	Fetal Heart	heart
4	chr6:102326600-102327200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:102326600-102327200	Active TSS	Ovary	ovary

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