Variant report

Variant	rs4552693
Chromosome Location	chr6:73638210-73638211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73634456..73636689-chr6:73637835..73640049,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11756197	0.88[CHB][hapmap]
rs1316784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1317537	0.80[JPT][hapmap]
rs1317538	0.80[JPT][hapmap]
rs1342337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935526	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1935527	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2882328	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4388257	0.82[EUR][1000 genomes]
rs6909147	0.81[AMR][1000 genomes]
rs6909225	0.80[AMR][1000 genomes]
rs6913925	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6915633	0.81[AMR][1000 genomes]
rs6924280	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6929515	0.95[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71573567	0.81[AMR][1000 genomes]
rs7740837	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9341390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9342986	0.95[CEU][hapmap];0.83[CHB][hapmap];0.92[EUR][1000 genomes]
rs9342987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9351954	0.82[AMR][1000 genomes]
rs9351955	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9351956	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9360610	0.81[CEU][hapmap]
rs9360612	0.87[CEU][hapmap];0.80[AMR][1000 genomes]
rs9360614	0.80[AMR][1000 genomes]
rs9360616	0.88[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap]
rs9360617	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9360618	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9360619	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886155	chr6:73551937-73649330	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73607600-73715400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73624600-73641400	Weak transcription	Psoas Muscle	Psoas
3	chr6:73624600-73658600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:73630000-73648400	Weak transcription	Aorta	Aorta
5	chr6:73635600-73641200	Weak transcription	Fetal Heart	heart
6	chr6:73638000-73638800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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