Variant report

Variant	rs9360618
Chromosome Location	chr6:73629208-73629209
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10805969	0.81[AMR][1000 genomes]
rs11756197	0.82[AMR][1000 genomes]
rs1316784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1317537	0.81[JPT][hapmap]
rs1317538	0.81[JPT][hapmap]
rs1342337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17800259	0.82[AMR][1000 genomes]
rs1935526	1.00[CEU][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1935527	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2882328	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4388257	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4552693	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6908756	0.81[AMR][1000 genomes]
rs6909147	0.85[AMR][1000 genomes]
rs6909225	0.84[AMR][1000 genomes]
rs6909241	0.82[AMR][1000 genomes]
rs6913925	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6915633	0.85[AMR][1000 genomes]
rs6924280	1.00[CEU][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6929515	0.95[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6930157	0.81[AMR][1000 genomes]
rs71573567	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7740837	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9341390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9342986	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs9342987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9351954	0.87[AMR][1000 genomes]
rs9351955	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9351956	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9360610	0.82[AMR][1000 genomes]
rs9360611	0.82[AMR][1000 genomes]
rs9360612	0.84[CEU][hapmap];0.84[AMR][1000 genomes]
rs9360614	0.84[AMR][1000 genomes]
rs9360616	0.88[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9360617	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9360619	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886155	chr6:73551937-73649330	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73607600-73715400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73624600-73637200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:73624600-73641400	Weak transcription	Psoas Muscle	Psoas
4	chr6:73624600-73658600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:73627800-73634000	Weak transcription	Fetal Heart	heart

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