Variant report

Variant	rs9360616
Chromosome Location	chr6:73616236-73616237
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73615548..73617402-chr6:73617942..73620639,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10805969	0.84[CEU][hapmap];0.89[CHB][hapmap];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11756197	0.90[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12526735	0.85[JPT][hapmap]
rs12664704	0.83[CHB][hapmap]
rs1316784	0.87[CEU][hapmap];0.90[JPT][hapmap]
rs1342337	0.87[CEU][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes]
rs17800259	0.87[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1935526	0.87[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1935527	0.88[CEU][hapmap];0.80[CHB][hapmap];0.90[JPT][hapmap]
rs2882328	0.87[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2995346	0.83[CHB][hapmap]
rs3005769	0.82[CHB][hapmap]
rs3763159	0.82[CHB][hapmap]
rs4388257	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4552693	0.88[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap]
rs6908756	0.92[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6909147	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6909225	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6909241	0.88[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6913925	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915633	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924175	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6924280	0.87[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6929515	0.83[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6930157	0.87[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs71573567	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7740837	0.88[CEU][hapmap];0.83[AMR][1000 genomes]
rs9341390	0.87[CEU][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes]
rs9342981	0.83[CHB][hapmap]
rs9342986	0.83[CEU][hapmap];0.83[CHB][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9342987	0.88[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9351950	0.82[CHB][hapmap]
rs9351951	0.82[CHB][hapmap]
rs9351954	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9351955	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9351956	0.87[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9360608	0.82[CHB][hapmap]
rs9360610	0.86[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9360611	0.87[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9360612	0.96[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9360614	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9360617	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9360618	0.88[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9360619	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886155	chr6:73551937-73649330	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73607600-73715400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73615000-73616400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
3	chr6:73615200-73616400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:73616000-73616400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:73616000-73621200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:73616000-73621200	Weak transcription	HMEC	breast
7	chr6:73616200-73626600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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