Variant report

Variant	rs9360611
Chromosome Location	chr6:73598337-73598338
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10805969	0.95[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11756197	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12526205	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12664704	0.83[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1316784	0.85[MEX][hapmap];0.82[TSI][hapmap]
rs1342337	0.85[MEX][hapmap];0.82[TSI][hapmap];0.83[AMR][1000 genomes]
rs16882996	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17800259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1891396	0.84[CHD][hapmap];0.90[GIH][hapmap];0.81[MKK][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1891398	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1935526	0.84[CHB][hapmap];0.87[CHD][hapmap];0.85[GIH][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes]
rs2882328	0.89[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2995346	0.88[CHB][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3005769	0.88[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];0.83[JPT][hapmap];0.86[MKK][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3763159	0.83[CEU][hapmap];0.88[CHB][hapmap];0.86[CHD][hapmap];0.90[GIH][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4388257	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62412473	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6908756	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909147	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6909225	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6909241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913925	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6915633	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6924175	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924280	0.84[CHB][hapmap];0.87[CHD][hapmap];0.85[GIH][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes]
rs6929515	0.89[CHB][hapmap];0.87[CHD][hapmap];0.85[GIH][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap];0.85[TSI][hapmap];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6930157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71573567	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7740837	0.83[AMR][1000 genomes]
rs9341390	0.85[MEX][hapmap];0.82[TSI][hapmap];0.83[AMR][1000 genomes]
rs9342980	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9342981	0.83[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9342986	0.94[CHB][hapmap]
rs9342987	0.82[AMR][1000 genomes]
rs9350473	0.83[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9351950	0.83[CEU][hapmap];0.88[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9351951	0.83[CEU][hapmap];0.88[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];0.83[JPT][hapmap];0.81[MKK][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9351954	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9351955	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9351956	0.89[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9360608	0.82[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9360610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.90[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9360612	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9360614	0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9360616	0.87[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9360617	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9360618	0.82[AMR][1000 genomes]
rs9360619	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886155	chr6:73551937-73649330	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv886156	chr6:73578415-73603675	Weak transcription Enhancers Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9360611	MYO6	cis	cerebellum	SCAN
rs9360611	SMAP1	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73596200-73603800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:73597200-73601600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:73597200-73606800	Weak transcription	Primary B cells from cord blood	blood

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