Variant report

Variant	rs9342986
Chromosome Location	chr6:73626650-73626651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10805969	0.83[CHB][hapmap]
rs11756197	0.83[CHB][hapmap];0.84[YRI][hapmap]
rs1316784	0.95[CEU][hapmap];0.80[CHB][hapmap];0.92[EUR][1000 genomes]
rs1342337	0.95[CEU][hapmap];0.80[CHB][hapmap];0.92[EUR][1000 genomes]
rs17800259	0.94[CHB][hapmap]
rs1935526	0.95[CEU][hapmap];0.89[CHB][hapmap];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1935527	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs2882328	0.95[CEU][hapmap];0.94[CHB][hapmap];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3005769	0.83[CHB][hapmap]
rs3763159	0.83[CHB][hapmap]
rs4388257	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4552693	0.95[CEU][hapmap];0.83[CHB][hapmap];0.92[EUR][1000 genomes]
rs6908756	0.88[CHB][hapmap]
rs6909147	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6909225	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6909241	0.89[CHB][hapmap]
rs6913925	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6915633	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6924280	0.95[CEU][hapmap];0.89[CHB][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6929515	0.91[CEU][hapmap];0.94[CHB][hapmap];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6930157	0.94[CHB][hapmap]
rs71573567	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7740837	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs9341390	0.95[CEU][hapmap];0.80[CHB][hapmap];0.92[EUR][1000 genomes]
rs9342987	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs9351950	0.83[CHB][hapmap]
rs9351951	0.83[CHB][hapmap]
rs9351954	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9351955	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9351956	0.95[CEU][hapmap];0.94[CHB][hapmap];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9360610	0.94[CHB][hapmap]
rs9360611	0.94[CHB][hapmap]
rs9360612	0.89[CHB][hapmap]
rs9360614	0.83[ASN][1000 genomes]
rs9360616	0.83[CEU][hapmap];0.83[CHB][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9360617	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9360618	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs9360619	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886155	chr6:73551937-73649330	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73607600-73715400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73624600-73626800	Enhancers	Fetal Heart	heart
3	chr6:73624600-73637200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:73624600-73641400	Weak transcription	Psoas Muscle	Psoas
5	chr6:73624600-73658600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:73625800-73626800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:73626000-73626800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:73626400-73626800	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr6:73626600-73627000	Enhancers	Skeletal Muscle Female	skeletal muscle

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