Variant report

Variant rs45530237
Chromosome Location chr19:52519005-52519006
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:110 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:52512000-52525400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr19:52512200-52519200 Weak transcription Placenta Amnion Placenta Amnion
3 chr19:52512200-52519200 Weak transcription NHLF lung
4 chr19:52512200-52519400 Weak transcription Right Ventricle heart
5 chr19:52512200-52519600 Weak transcription Stomach Mucosa stomach
6 chr19:52514000-52530400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
7 chr19:52514400-52522600 Strong transcription Brain Germinal Matrix brain
8 chr19:52515200-52530800 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr19:52515400-52522600 Strong transcription iPS-20b Cell Line embryonic stem cell
10 chr19:52515400-52530800 ZNF genes & repeats Primary B cells from cord blood blood
11 chr19:52515400-52546400 ZNF genes & repeats Liver Liver
12 chr19:52515600-52519400 Strong transcription Dnd41 blood
13 chr19:52515600-52529400 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
14 chr19:52516000-52529000 ZNF genes & repeats Pancreatic Islets Pancreatic Islet
15 chr19:52516000-52529400 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
16 chr19:52516200-52523400 Strong transcription Placenta Placenta
17 chr19:52516400-52519400 Weak transcription Thymus Thymus
18 chr19:52516600-52520400 Weak transcription Fetal Stomach stomach
19 chr19:52517200-52523000 Strong transcription HUES6 Cell Line embryonic stem cell
20 chr19:52517200-52528800 ZNF genes & repeats Adipose Nuclei Adipose
21 chr19:52517200-52529200 ZNF genes & repeats Primary T cells from cord blood blood
22 chr19:52517400-52519200 Strong transcription HepG2 liver
23 chr19:52517400-52519400 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
24 chr19:52517400-52519600 Strong transcription Fetal Brain Female brain
25 chr19:52517400-52521800 ZNF genes & repeats Foreskin Keratinocyte Primary Cells skin03 Skin
26 chr19:52517400-52522000 ZNF genes & repeats NH-A brain
27 chr19:52517400-52525200 Strong transcription HUES64 Cell Line embryonic stem cell
28 chr19:52517400-52525600 ZNF genes & repeats Brain Angular Gyrus brain
29 chr19:52517400-52527000 ZNF genes & repeats Brain Inferior Temporal Lobe brain
30 chr19:52517400-52527200 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
31 chr19:52517400-52527600 ZNF genes & repeats Brain Cingulate Gyrus brain
32 chr19:52517400-52527600 ZNF genes & repeats Brain Hippocampus Middle brain
33 chr19:52517400-52529400 Strong transcription iPS-18 Cell Line embryonic stem cell
34 chr19:52517400-52529400 ZNF genes & repeats Duodenum Smooth Muscle Duodenum
35 chr19:52517400-52529600 ZNF genes & repeats Primary T killer naive cells fromperipheralblood blood
36 chr19:52517400-52530200 ZNF genes & repeats Ovary ovary
37 chr19:52517400-52530600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
38 chr19:52517400-52530800 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
39 chr19:52517600-52519400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
40 chr19:52517600-52519400 Strong transcription HSMMtube muscle
41 chr19:52517600-52519600 Strong transcription Muscle Satellite Cultured Cells --
42 chr19:52517600-52521800 ZNF genes & repeats Psoas Muscle Psoas
43 chr19:52517600-52522000 ZNF genes & repeats Primary T killer memory cells from peripheral blood blood
44 chr19:52517600-52523800 ZNF genes & repeats K562 blood
45 chr19:52517600-52524600 Strong transcription HUES48 Cell Line embryonic stem cell
46 chr19:52517600-52525600 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
47 chr19:52517600-52525600 ZNF genes & repeats Brain Substantia Nigra brain
48 chr19:52517600-52527400 ZNF genes & repeats IMR90 fetal lung fibroblasts Cell Line lung
49 chr19:52517600-52530200 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
50 chr19:52517600-52530400 ZNF genes & repeats Primary hematopoietic stem cells blood

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