Variant report

Variant	rs4580323
Chromosome Location	chr19:21201525-21201526
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA2	chr19:21201271-21201598	K562	blood:	n/a	chr19:21201424-21201435

Variant related genes	Relation type
ZNF430	TF binding region

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10413569	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10413841	0.96[EUR][1000 genomes]
rs10416447	0.99[EUR][1000 genomes]
rs10425841	0.92[EUR][1000 genomes]
rs11085427	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11085429	0.89[EUR][1000 genomes]
rs12052091	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12150909	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12151107	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17618418	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2358793	0.94[EUR][1000 genomes]
rs3919641	0.96[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs3937493	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61733856	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66693308	0.90[EUR][1000 genomes]
rs73012909	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73012916	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73012919	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73012925	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73012931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73012943	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73014828	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73014838	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73014844	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73014852	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73014854	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73014855	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73014863	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73014868	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73018961	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73018974	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73018975	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73018978	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73019002	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73020605	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73020608	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73020616	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73020624	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73020625	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73020628	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73020630	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73020631	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73020636	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73020644	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73020654	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73020661	0.90[EUR][1000 genomes]
rs73022623	0.90[EUR][1000 genomes]
rs73022624	0.90[EUR][1000 genomes]
rs73022630	0.90[EUR][1000 genomes]
rs73022634	0.89[EUR][1000 genomes]
rs73022639	0.89[EUR][1000 genomes]
rs73022640	0.87[EUR][1000 genomes]
rs73022648	0.88[EUR][1000 genomes]
rs73022667	0.88[EUR][1000 genomes]
rs73024637	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs73024645	0.88[EUR][1000 genomes]
rs73024647	0.88[EUR][1000 genomes]
rs73024648	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs73024655	0.88[EUR][1000 genomes]
rs73024657	0.88[EUR][1000 genomes]
rs73024662	0.88[EUR][1000 genomes]
rs73024665	0.86[EUR][1000 genomes]
rs73024668	0.88[EUR][1000 genomes]
rs73024670	0.88[EUR][1000 genomes]
rs73024671	0.88[EUR][1000 genomes]
rs73024674	0.88[EUR][1000 genomes]
rs73024675	0.88[EUR][1000 genomes]
rs73024685	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs73024688	0.88[EUR][1000 genomes]
rs73026655	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs73026661	0.88[EUR][1000 genomes]
rs73026662	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs73026693	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062776	chr19:20818886-21273361	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv932110	chr19:20818886-21278952	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv2763043	chr19:20818886-21290543	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv3385528	chr19:21030777-21495566	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv817536	chr19:21041855-21348237	Strong transcription Enhancers Genic enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	esv1850387	chr19:21109758-21294264	Active TSS ZNF genes & repeats Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv911411	chr19:21184533-21263518	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv578949	chr19:21190572-21244049	ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
9	nsv960811	chr19:21200306-21371757	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21192200-21203000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr19:21192400-21203000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr19:21192400-21203400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr19:21192600-21203000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links