Variant report

Variant	rs73012909
Chromosome Location	chr19:21182797-21182798
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10413569	0.95[EUR][1000 genomes]
rs10413841	0.99[EUR][1000 genomes]
rs10416447	0.95[EUR][1000 genomes]
rs10425841	0.89[EUR][1000 genomes]
rs11085427	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11085429	0.86[EUR][1000 genomes]
rs12052091	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12150909	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12151107	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17618418	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2358793	0.91[EUR][1000 genomes]
rs3919641	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs3937493	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4580323	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61733856	0.87[EUR][1000 genomes]
rs66693308	0.87[EUR][1000 genomes]
rs73012916	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73012919	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73012925	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73012931	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73012943	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs73014828	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73014838	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73014844	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73014852	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs73014854	0.89[EUR][1000 genomes]
rs73014855	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs73014863	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs73014868	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs73018961	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73018974	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73018975	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73018978	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73019002	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73020605	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73020608	0.87[EUR][1000 genomes]
rs73020616	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73020624	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73020625	0.87[EUR][1000 genomes]
rs73020628	0.87[EUR][1000 genomes]
rs73020630	0.87[EUR][1000 genomes]
rs73020631	0.87[EUR][1000 genomes]
rs73020636	0.87[EUR][1000 genomes]
rs73020644	0.87[EUR][1000 genomes]
rs73020654	0.87[EUR][1000 genomes]
rs73020661	0.87[EUR][1000 genomes]
rs73022623	0.87[EUR][1000 genomes]
rs73022624	0.87[EUR][1000 genomes]
rs73022630	0.87[EUR][1000 genomes]
rs73022634	0.86[EUR][1000 genomes]
rs73022639	0.86[EUR][1000 genomes]
rs73022640	0.84[EUR][1000 genomes]
rs73022648	0.85[EUR][1000 genomes]
rs73022667	0.85[EUR][1000 genomes]
rs73024637	0.85[EUR][1000 genomes]
rs73024645	0.85[EUR][1000 genomes]
rs73024647	0.85[EUR][1000 genomes]
rs73024648	0.85[EUR][1000 genomes]
rs73024655	0.85[EUR][1000 genomes]
rs73024657	0.85[EUR][1000 genomes]
rs73024662	0.85[EUR][1000 genomes]
rs73024665	0.83[EUR][1000 genomes]
rs73024668	0.85[EUR][1000 genomes]
rs73024670	0.85[EUR][1000 genomes]
rs73024671	0.85[EUR][1000 genomes]
rs73024674	0.85[EUR][1000 genomes]
rs73024675	0.85[EUR][1000 genomes]
rs73024685	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs73024688	0.85[EUR][1000 genomes]
rs73026655	0.85[EUR][1000 genomes]
rs73026661	0.85[EUR][1000 genomes]
rs73026662	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs73026693	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062776	chr19:20818886-21273361	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv932110	chr19:20818886-21278952	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv2763043	chr19:20818886-21290543	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv3385528	chr19:21030777-21495566	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv817536	chr19:21041855-21348237	Strong transcription Enhancers Genic enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	esv1850387	chr19:21109758-21294264	Active TSS ZNF genes & repeats Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21181400-21182800	Weak transcription	Spleen	Spleen
2	chr19:21182200-21182800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr19:21182200-21182800	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr19:21182200-21183000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr19:21182200-21183000	Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr19:21182200-21183000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr19:21182200-21183000	Active TSS	Fetal Brain Female	brain
8	chr19:21182200-21183000	Active TSS	Fetal Stomach	stomach
9	chr19:21182200-21183000	Active TSS	Stomach Smooth Muscle	stomach
10	chr19:21182200-21183200	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr19:21182200-21183400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr19:21182200-21183400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr19:21182200-21183600	Active TSS	Brain Germinal Matrix	brain
14	chr19:21182200-21183800	Active TSS	HUES64 Cell Line	embryonic stem cell
15	chr19:21182400-21182800	Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr19:21182400-21182800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
17	chr19:21182400-21182800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr19:21182400-21182800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr19:21182400-21182800	Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr19:21182400-21182800	Active TSS	Stomach Mucosa	stomach
21	chr19:21182400-21182800	Active TSS	NHDF-Ad	bronchial
22	chr19:21182400-21183000	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
23	chr19:21182400-21183000	Active TSS	Primary hematopoietic stem cells	blood
24	chr19:21182400-21183000	Active TSS	Cortex derived primary cultured neurospheres	brain
25	chr19:21182400-21183000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr19:21182400-21183000	Active TSS	Brain Anterior Caudate	brain
27	chr19:21182400-21183000	Active TSS	Brain Hippocampus Middle	brain
28	chr19:21182400-21183000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr19:21182400-21183000	Active TSS	Duodenum Mucosa	Duodenum
30	chr19:21182400-21183200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr19:21182400-21183200	Active TSS	Muscle Satellite Cultured Cells	--
32	chr19:21182400-21183200	Flanking Active TSS	Adipose Nuclei	Adipose
33	chr19:21182400-21183200	Active TSS	Thymus	Thymus
34	chr19:21182400-21183200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr19:21182400-21183200	Active TSS	NH-A	brain
36	chr19:21182400-21183200	Active TSS	Osteobl	bone
37	chr19:21182400-21183400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr19:21182400-21183400	Active TSS	Fetal Intestine Large	intestine
39	chr19:21182400-21183400	Active TSS	Fetal Intestine Small	intestine
40	chr19:21182400-21183400	Active TSS	Rectal Mucosa Donor 29	rectum
41	chr19:21182400-21183400	Active TSS	Rectal Smooth Muscle	rectum
42	chr19:21182400-21183400	Active TSS	GM12878-XiMat	blood
43	chr19:21182400-21183400	Active TSS	NHEK	skin
44	chr19:21182400-21183600	Active TSS	Fetal Kidney	kidney
45	chr19:21182400-21183600	Active TSS	Fetal Lung	lung
46	chr19:21182400-21183800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr19:21182400-21183800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr19:21182600-21182800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr19:21182600-21182800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr19:21182600-21182800	Active TSS	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links