Variant report
Variant | rs73012925 |
---|---|
Chromosome Location | chr19:21193994-21193995 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10413569 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs10413841 | 0.96[EUR][1000 genomes] |
rs10416447 | 0.99[EUR][1000 genomes] |
rs10425841 | 0.92[EUR][1000 genomes] |
rs11085427 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs11085429 | 0.89[EUR][1000 genomes] |
rs12052091 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs12150909 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs12151107 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs17618418 | 0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs2358793 | 0.94[EUR][1000 genomes] |
rs3919641 | 0.87[AFR][1000 genomes];0.88[EUR][1000 genomes] |
rs3937493 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs4580323 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs61733856 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs66693308 | 0.90[EUR][1000 genomes] |
rs73012909 | 0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs73012916 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73012919 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73012931 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73012943 | 0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs73014828 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs73014838 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs73014844 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs73014852 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs73014854 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs73014855 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs73014863 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs73014868 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs73018961 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs73018974 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs73018975 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs73018978 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs73019002 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs73020605 | 0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs73020608 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs73020616 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs73020624 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs73020625 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs73020628 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs73020630 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs73020631 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs73020636 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs73020644 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs73020654 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs73020661 | 0.90[EUR][1000 genomes] |
rs73022623 | 0.90[EUR][1000 genomes] |
rs73022624 | 0.90[EUR][1000 genomes] |
rs73022630 | 0.90[EUR][1000 genomes] |
rs73022634 | 0.89[EUR][1000 genomes] |
rs73022639 | 0.89[EUR][1000 genomes] |
rs73022640 | 0.87[EUR][1000 genomes] |
rs73022648 | 0.88[EUR][1000 genomes] |
rs73022667 | 0.88[EUR][1000 genomes] |
rs73024637 | 0.88[EUR][1000 genomes] |
rs73024645 | 0.88[EUR][1000 genomes] |
rs73024647 | 0.88[EUR][1000 genomes] |
rs73024648 | 0.88[EUR][1000 genomes] |
rs73024655 | 0.88[EUR][1000 genomes] |
rs73024657 | 0.88[EUR][1000 genomes] |
rs73024662 | 0.88[EUR][1000 genomes] |
rs73024665 | 0.86[EUR][1000 genomes] |
rs73024668 | 0.88[EUR][1000 genomes] |
rs73024670 | 0.88[EUR][1000 genomes] |
rs73024671 | 0.88[EUR][1000 genomes] |
rs73024674 | 0.88[EUR][1000 genomes] |
rs73024675 | 0.88[EUR][1000 genomes] |
rs73024685 | 0.83[AFR][1000 genomes];0.88[EUR][1000 genomes] |
rs73024688 | 0.88[EUR][1000 genomes] |
rs73026655 | 0.88[EUR][1000 genomes] |
rs73026661 | 0.88[EUR][1000 genomes] |
rs73026662 | 0.83[AFR][1000 genomes];0.88[EUR][1000 genomes] |
rs73026693 | 0.84[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1062776 | chr19:20818886-21273361 | Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
2 | nsv932110 | chr19:20818886-21278952 | Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
3 | esv2763043 | chr19:20818886-21290543 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
4 | esv3385528 | chr19:21030777-21495566 | Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
5 | nsv817536 | chr19:21041855-21348237 | Strong transcription Enhancers Genic enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
6 | esv1850387 | chr19:21109758-21294264 | Active TSS ZNF genes & repeats Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
7 | nsv911411 | chr19:21184533-21263518 | ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
8 | nsv578949 | chr19:21190572-21244049 | ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 8 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr19:21183400-21196000 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
2 | chr19:21183800-21194200 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
3 | chr19:21184000-21198000 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
4 | chr19:21184400-21196800 | Weak transcription | H9 Cell Line | embryonic stem cell |
5 | chr19:21190800-21195400 | Weak transcription | Dnd41 | blood |
6 | chr19:21192200-21194000 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
7 | chr19:21192200-21203000 | Weak transcription | H1 Cell Line | embryonic stem cell |
8 | chr19:21192400-21203000 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
9 | chr19:21192400-21203400 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
10 | chr19:21192600-21203000 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |