Variant report

Variant	rs4665179
Chromosome Location	chr2:21321724-21321725
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11693760	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11693775	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11693870	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12052779	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1367113	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1367115	0.81[EUR][1000 genomes]
rs17395333	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17395512	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17399144	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1897083	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2115838	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2163203	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2195597	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2337383	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2878956	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4665176	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4665178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4665492	0.82[EUR][1000 genomes]
rs56079819	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56090741	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56201838	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56306424	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs565202	0.91[ASN][1000 genomes]
rs571468	0.89[ASN][1000 genomes]
rs594677	0.89[ASN][1000 genomes]
rs61539677	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62122515	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62122516	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62122520	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62133263	0.86[EUR][1000 genomes]
rs62133264	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62135035	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6548010	0.81[EUR][1000 genomes]
rs6548011	0.81[EUR][1000 genomes]
rs6726115	0.81[EUR][1000 genomes]
rs754523	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7575840	0.80[EUR][1000 genomes]
rs7590135	0.81[EUR][1000 genomes]
rs934198	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21315800-21326400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:21318200-21322800	Enhancers	Fetal Intestine Large	intestine
3	chr2:21318200-21323600	Enhancers	Fetal Intestine Small	intestine
4	chr2:21318400-21322400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:21320400-21321800	Enhancers	Duodenum Mucosa	Duodenum
6	chr2:21320400-21322400	Enhancers	Adipose Nuclei	Adipose
7	chr2:21320600-21322600	Enhancers	HepG2	liver
8	chr2:21320800-21326200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr2:21321000-21321800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr2:21321000-21323200	Enhancers	Liver	Liver
11	chr2:21321200-21326000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr2:21321200-21326200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr2:21321400-21326400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr2:21321400-21326800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr2:21321600-21323200	Enhancers	Colon Smooth Muscle	Colon
16	chr2:21321600-21326200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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